构建多中心结肠镜图像数据集,助力智能息肉检测算法研发
PolypDB: A Curated Multi-Center Dataset for Development of AI Algorithms in Colonoscopy
- 整合五种成像模式的3934张真实结肠镜图像
- 覆盖挪威、瑞典、越南三中心数据,支持跨中心学习
- 提供分割与检测基准,支持联邦学习实验
结肠镜检查是发现并切除息肉的主要手段,但受内镜医师技能差异、肠道准备质量及大肠复杂结构影响,息肉漏检率较高,可能发展为癌症。为解决现有公开、多中心、大规模且多样化的息肉检测与分割数据集匮乏问题,本文提出PolypDB,一个包含3934张静态息肉图像及其对应标注的公开数据集,涵盖蓝光成像(BLI)、自适应色彩增强(FICE)、联色成像(LCI)、窄带成像(NBI)和白光成像(WLI)五种模态,数据来自挪威、瑞典和越南三家医疗中心。研究提供了各模态与中心的基准测试,包括主流分割与检测模型的性能评估,以及基于联邦学习的设置。数据集已开源,可通过https://osf.io/pr7ms/下载,详细信息详见https://github.com/DebeshJha/PolypDB。
原文摘要 · Abstract (English)
Colonoscopy is the primary method for examination, detection, and removal of polyps. However, challenges such as variations among the endoscopists' skills, bowel quality preparation, and the complex nature of the large intestine contribute to high polyp miss-rate. These missed polyps can develop into cancer later, underscoring the importance of improving the detection methods. To address this gap of lack of publicly available, multi-center large and diverse datasets for developing automatic methods for polyp detection and segmentation, we introduce PolypDB, a large scale publicly available dataset that contains 3934 still polyp images and their corresponding ground truth from real colonoscopy videos. PolypDB comprises images from five modalities: Blue Light Imaging (BLI), Flexible Imaging Color Enhancement (FICE), Linked Color Imaging (LCI), Narrow Band Imaging (NBI), and White Light Imaging (WLI) from three medical centers in Norway, Sweden, and Vietnam. We provide a benchmark on each modality and center, including federated learning settings using popular segmentation and detection benchmarks. PolypDB is public and can be downloaded at \url{https://osf.io/pr7ms/}. More information about the dataset, segmentation, detection, federated learning benchmark and train-test split can be found at \url{https://github.com/DebeshJha/PolypDB}.
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