arXiv:2409.02149q-bio.QMcs.LG2024-09被引 6

用集成学习与蒙特卡洛采样提升小数据下细胞培养预测的不确定性估计能力。

Uncertainty Quantification Using Ensemble Learning and Monte Carlo Sampling for Performance Prediction and Monitoring in Cell Culture Processes

  • 通过集成学习和蒙特卡洛采样生成额外输入样本,增强小数据模型鲁棒性。
  • 在抗体浓度预测与葡萄糖实时监测中,准确捕捉了过程性能的不确定性水平。
  • 适合关注生物制药过程控制与机器学习可靠性评估的研究者使用。

单克隆抗体(mAbs)因高特异性和疗效,在制药市场中日益重要,预计将成为全球药品销售的重要组成部分。机器学习在mAb开发与制造中的应用正迅速发展。本文针对小样本训练数据下机器学习预测的不确定性量化难题,提出一种结合集成学习与蒙特卡洛模拟的新方法。该方法通过生成额外输入样本,提升模型在小数据下的稳健性。我们在两个案例中验证其效果:利用拉曼光谱数据提前预测抗体浓度,以及在生物反应器运行中实时监测葡萄糖浓度。结果表明,该方法能有效估计工艺性能预测的不确定性,支持实时决策。本研究不仅提出了新颖的不确定性量化框架,还为克服小样本数据带来的挑战提供了可行路径。评估显示,该方法在上游细胞培养过程中具有显著潜力,可提升工艺控制与产品质量。

原文摘要 · Abstract (English)

Biopharmaceutical products, particularly monoclonal antibodies (mAbs), have gained prominence in the pharmaceutical market due to their high specificity and efficacy. As these products are projected to constitute a substantial portion of global pharmaceutical sales, the application of machine learning models in mAb development and manufacturing is gaining momentum. This paper addresses the critical need for uncertainty quantification in machine learning predictions, particularly in scenarios with limited training data. Leveraging ensemble learning and Monte Carlo simulations, our proposed method generates additional input samples to enhance the robustness of the model in small training datasets. We evaluate the efficacy of our approach through two case studies: predicting antibody concentrations in advance and real-time monitoring of glucose concentrations during bioreactor runs using Raman spectra data. Our findings demonstrate the effectiveness of the proposed method in estimating the uncertainty levels associated with process performance predictions and facilitating real-time decision-making in biopharmaceutical manufacturing. This contribution not only introduces a novel approach for uncertainty quantification but also provides insights into overcoming challenges posed by small training datasets in bioprocess development. The evaluation demonstrates the effectiveness of our method in addressing key challenges related to uncertainty estimation within upstream cell cultivation, illustrating its potential impact on enhancing process control and product quality in the dynamic field of biopharmaceuticals.

不确定性量化生物制药小样本学习集成学习

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