用病变特异性注意力图提升多发性硬化症病灶分割准确率
Exploiting XAI maps to improve MS lesion segmentation and detection in MRI
- 基于病灶注意力图的特征优化分割模型
- 测试集F1得分从0.7006提升至0.7450,阳性预测值达0.7817
- 适合医学影像分析与可解释性模型研究者参考
目前已有多种方法用于解释深度学习在分类任务中的决策过程。近期,有研究将其中两种方法改编用于语义分割场景下的实例级可解释性地图生成,如多发性硬化(MS)病灶分割。该研究中,3D U-Net模型在MS病灶分割上取得F1分数0.7006和阳性预测值(PPV)0.6265。通过分析可解释性地图的分布,发现真阳性(TP)与假阳性(FP)样本间存在显著差异。受此启发,本文探索利用病变特异性显著性图的特征来优化分割与检测性能。从72例患者的训练集中生成约21000张显著性图,测试集37例患者生成4868张。从训练集地图中提取93个放射组学特征,训练逻辑回归模型以区分TP与FP。在测试集上,模型的F1分数与PPV分别提升至0.7450与0.7817,95%置信区间分别为[0.7358, 0.7547]和[0.7679, 0.7962],表明显著性图可用于提升预测性能。
原文摘要 · Abstract (English)
To date, several methods have been developed to explain deep learning algorithms for classification tasks. Recently, an adaptation of two of such methods has been proposed to generate instance-level explainable maps in a semantic segmentation scenario, such as multiple sclerosis (MS) lesion segmentation. In the mentioned work, a 3D U-Net was trained and tested for MS lesion segmentation, yielding an F1 score of 0.7006, and a positive predictive value (PPV) of 0.6265. The distribution of values in explainable maps exposed some differences between maps of true and false positive (TP/FP) examples. Inspired by those results, we explore in this paper the use of characteristics of lesion-specific saliency maps to refine segmentation and detection scores. We generate around 21000 maps from as many TP/FP lesions in a batch of 72 patients (training set) and 4868 from the 37 patients in the test set. 93 radiomic features extracted from the first set of maps were used to train a logistic regression model and classify TP versus FP. On the test set, F1 score and PPV were improved by a large margin when compared to the initial model, reaching 0.7450 and 0.7817, with 95% confidence intervals of [0.7358, 0.7547] and [0.7679, 0.7962], respectively. These results suggest that saliency maps can be used to refine prediction scores, boosting a model's performances.
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