研究不同融合位置对腹部影像分割的影响,发现最佳融合点因模型而异。
Influence of Early through Late Fusion on Pancreas Segmentation from Imperfectly Registered Multimodal MRI
- 在编码器中段进行早期融合,提升分割效果
- 基础UNet模型融合后Dice分数提高0.0125
- 模型差异大,需针对性设计融合策略
多模态融合有望提升胰腺分割精度,但融合位置仍存疑问。本研究针对非完美配准的T2w与T1w腹部MRI图像对(共353对,来自163名受试者),使用deeds进行图像配准,训练一系列不同融合位置的基础UNet(从早期到晚期融合),评估融合位置对分割性能的影响。结果表明:基础UNet的单模态T2w基线Dice为0.73,而nnUNet基线达0.80。基础UNet中,编码器中段融合(早/中融合)表现最优,显著提升0.0125的Dice;nnUNet则在模型前直接拼接图像(早期融合)效果最好,提升0.0021。特定模块融合可改善性能,但最佳融合块依赖模型,增益微小。在非完美配准数据下,融合策略选择复杂,模型设计仍具关键作用。未来需更优方法应对腹部图像对的不完美对齐问题。
原文摘要 · Abstract (English)
Multimodal fusion promises better pancreas segmentation. However, where to perform fusion in models is still an open question. It is unclear if there is a best location to fuse information when analyzing pairs of imperfectly aligned images. Two main alignment challenges in this pancreas segmentation study are 1) the pancreas is deformable and 2) breathing deforms the abdomen. Even after image registration, relevant deformations are often not corrected. We examine how early through late fusion impacts pancreas segmentation. We used 353 pairs of T2-weighted (T2w) and T1-weighted (T1w) abdominal MR images from 163 subjects with accompanying pancreas labels. We used image registration (deeds) to align the image pairs. We trained a collection of basic UNets with different fusion points, spanning from early to late, to assess how early through late fusion influenced segmentation performance on imperfectly aligned images. We assessed generalization of fusion points on nnUNet. The single-modality T2w baseline using a basic UNet model had a Dice score of 0.73, while the same baseline on the nnUNet model achieved 0.80. For the basic UNet, the best fusion approach occurred in the middle of the encoder (early/mid fusion), which led to a statistically significant improvement of 0.0125 on Dice score compared to the baseline. For the nnUNet, the best fusion approach was naïve image concatenation before the model (early fusion), which resulted in a statistically significant Dice score increase of 0.0021 compared to baseline. Fusion in specific blocks can improve performance, but the best blocks for fusion are model specific, and the gains are small. In imperfectly registered datasets, fusion is a nuanced problem, with the art of design remaining vital for uncovering potential insights. Future innovation is needed to better address fusion in cases of imperfect alignment of abdominal image pairs.
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