arXiv:2409.07020eess.IVcs.CV2024-09

基于扩散MRI的脑区分割新方法,能精准识别异常区域并量化不确定性。

DDEvENet: Evidence-based Ensemble Learning for Uncertainty-aware Brain Parcellation Using Diffusion MRI

  • 通过证据集成框架融合多参数扩散MRI数据,实现单次推理中逐体素不确定性估计。
  • 在健康与疾病人群的多种扫描条件下,分割准确率显著优于现有方法。
  • 可有效检测病灶区域,提升脑分割结果的可解释性,适合临床神经影像分析。

本研究提出一种基于证据的集成神经网络EVENet,用于利用扩散MRI进行解剖学脑区分割。核心创新在于设计了一种证据深度学习框架,在单次推理中对每个体素的预测不确定性进行量化。为此,我们构建了基于证据的集成学习框架,以融合从扩散MRI中提取的多个参数信息。EVENet包含五个并行子网络,每个专用于学习特定扩散MRI参数对应的FreeSurfer脑区分割。随后采用证据集成方法融合各子网络输出。我们在来自多个成像源的大规模数据集上进行实验,包括健康成人高质扩散MRI数据及多种脑疾病患者(精神分裂症、双相情感障碍、注意力缺陷多动障碍、帕金森病、脑小血管病、脑肿瘤患者)的临床扩散MRI数据。相比多种先进方法,EVENet在不同扫描协议和健康状况下均表现出显著更高的分割准确率。此外,得益于不确定性估计,该方法在识别病理性脑区方面表现优异,增强了分割结果的可解释性与可靠性。

原文摘要 · Abstract (English)

In this study, we developed an Evidence-based Ensemble Neural Network, namely EVENet, for anatomical brain parcellation using diffusion MRI. The key innovation of EVENet is the design of an evidential deep learning framework to quantify predictive uncertainty at each voxel during a single inference. To do so, we design an evidence-based ensemble learning framework for uncertainty-aware parcellation to leverage the multiple dMRI parameters derived from diffusion MRI. Using EVENet, we obtained accurate parcellation and uncertainty estimates across different datasets from healthy and clinical populations and with different imaging acquisitions. The overall network includes five parallel subnetworks, where each is dedicated to learning the FreeSurfer parcellation for a certain diffusion MRI parameter. An evidence-based ensemble methodology is then proposed to fuse the individual outputs. We perform experimental evaluations on large-scale datasets from multiple imaging sources, including high-quality diffusion MRI data from healthy adults and clinically diffusion MRI data from participants with various brain diseases (schizophrenia, bipolar disorder, attention-deficit/hyperactivity disorder, Parkinson's disease, cerebral small vessel disease, and neurosurgical patients with brain tumors). Compared to several state-of-the-art methods, our experimental results demonstrate highly improved parcellation accuracy across the multiple testing datasets despite the differences in dMRI acquisition protocols and health conditions. Furthermore, thanks to the uncertainty estimation, our EVENet approach demonstrates a good ability to detect abnormal brain regions in patients with lesions, enhancing the interpretability and reliability of the segmentation results.

脑区分割扩散MRI不确定性估计医学影像

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