XMOL一次优化多个分子属性,还让过程可解释。
XMOL: Explainable Multi-property Optimization of Molecules
- 基于几何扩散模型,用谱归一化和约束增强实现多属性同步优化。
- 在QM9数据集上同时优化多个属性,效果优于传统方法。
- 适合需要透明设计过程的药物与材料研发人员。
分子优化是药物发现和材料科学中的关键挑战,旨在设计具备期望特性的分子。现有方法主要聚焦单属性优化,需重复运行才能覆盖多个属性,效率低下且计算成本高。此外,这些方法缺乏透明度,研究人员难以理解或控制优化过程。为此,我们提出可解释的多属性分子优化框架XMOL,实现多属性同步优化并融入可解释性。该方法基于先进的几何扩散模型,通过引入谱归一化和增强的分子约束,提升训练稳定性;同时在优化全程集成可解释技术。我们在真实世界数据集QM9上评估了XMOL,结果表明其在单属性和多属性优化中均有效,且提供可解释输出,为更高效、可靠的分子设计铺平道路。
原文摘要 · Abstract (English)
Molecular optimization is a key challenge in drug discovery and material science domain, involving the design of molecules with desired properties. Existing methods focus predominantly on single-property optimization, necessitating repetitive runs to target multiple properties, which is inefficient and computationally expensive. Moreover, these methods often lack transparency, making it difficult for researchers to understand and control the optimization process. To address these issues, we propose a novel framework, Explainable Multi-property Optimization of Molecules (XMOL), to optimize multiple molecular properties simultaneously while incorporating explainability. Our approach builds on state-of-the-art geometric diffusion models, extending them to multi-property optimization through the introduction of spectral normalization and enhanced molecular constraints for stabilized training. Additionally, we integrate interpretive and explainable techniques throughout the optimization process. We evaluated XMOL on the real-world molecular datasets i.e., QM9, demonstrating its effectiveness in both single property and multiple properties optimization while offering interpretable results, paving the way for more efficient and reliable molecular design.
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