用分数阶微分和神经网络建模药物动态,更准预测抗癌药在体内的行为。
CMINNs: Compartment Model Informed Neural Networks -- Unlocking Drug Dynamics
- 结合分数阶微分与神经网络,用两个方程模拟复杂药物动力学。
- 能准确捕捉药物在组织中的异常扩散、滞留和逃逸现象。
- 适合药理学家和生物医学工程师用于优化抗癌药设计。
在药代动力学与药效学(PKPD)建模领域,传统模型常难以全面刻画药物吸收、分布及其对靶点的影响。尽管多室模型常用于解析复杂药物动态,但可能过于繁琐。为此,我们提出一种新方法,通过引入分数阶微分或时变参数,结合常数或分段常数参数,增强PK及整合式PK-PD建模能力。该方法有效建模异常扩散,捕捉异质组织中药物滞留与逃逸速率,这是药物动态的常见现象。此外,该方法在多剂量给药下揭示了癌细胞内药物动态。采用物理信息神经网络(PINN)和分数阶物理信息神经网络(fPINNs),将整数/分数阶导数的常微分方程与神经网络结合,优化时变、常数、分段常数或分数阶导数阶次相关参数的估计。结果表明,该方法不仅显著提升模型对药物吸收速率和延迟响应的刻画能力,还揭示不同药物-效应动态,包括吸收速率、异常扩散、耐药性、持续性及药代耐受性,且仅需两个(分数阶)常微分方程,结果可解释。
原文摘要 · Abstract (English)
In the field of pharmacokinetics and pharmacodynamics (PKPD) modeling, which plays a pivotal role in the drug development process, traditional models frequently encounter difficulties in fully encapsulating the complexities of drug absorption, distribution, and their impact on targets. Although multi-compartment models are frequently utilized to elucidate intricate drug dynamics, they can also be overly complex. To generalize modeling while maintaining simplicity, we propose an innovative approach that enhances PK and integrated PK-PD modeling by incorporating fractional calculus or time-varying parameter(s), combined with constant or piecewise constant parameters. These approaches effectively model anomalous diffusion, thereby capturing drug trapping and escape rates in heterogeneous tissues, which is a prevalent phenomenon in drug dynamics. Furthermore, this method provides insight into the dynamics of drug in cancer in multi-dose administrations. Our methodology employs a Physics-Informed Neural Network (PINN) and fractional Physics-Informed Neural Networks (fPINNs), integrating ordinary differential equations (ODEs) with integer/fractional derivative order from compartmental modeling with neural networks. This integration optimizes parameter estimation for variables that are time-variant, constant, piecewise constant, or related to the fractional derivative order. The results demonstrate that this methodology offers a robust framework that not only markedly enhances the model's depiction of drug absorption rates and distributed delayed responses but also unlocks different drug-effect dynamics, providing new insights into absorption rates, anomalous diffusion, drug resistance, peristance and pharmacokinetic tolerance, all within a system of just two (fractional) ODEs with explainable results.
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