用分而治之法高效分类癌症病理图像,仅用少量切片即达高精度。
Efficient Classification of Histopathology Images
- 将图像切片分组,基于信息论采样关键区域切片
- 仅用极低比例切片训练,仍保持竞争性分类性能
- 适合资源受限的病理图像分析场景
本文针对具有图像级标注的挑战性组织病理图像(如用于癌症诊断的吉字节级全幻灯片图像)的高效分类问题。利用带有肿瘤区域标注的图像,从癌变幻灯片中识别出一组肿瘤切片和一组良性切片。由于感兴趣区域在像素中占比极小,导致大多数标记为‘癌变’的切片实际上不含肿瘤,从而产生严重的切片级别类别不平衡问题。此问题不同于语义分割(后者对每个像素标注),因切片提取后仅存在切片级别标签。现有方法通过重采样、损失加权、间隔调整和数据增强缓解少数类数据不足,防止模型被多数类主导。本文提出一种分而治之策略:首先将数据划分为子组,并基于这些划分定义三个独立分类子问题;然后采用基于信息论的聚类采样方法,从各子组中挑选具有判别性的深度图像切片特征;再使用这些采样切片构建对应的深度模型解决子问题;最后融合各模型学习到的信息,对切片做出最终决策。实验表明,该方法仅使用给定全幻灯片图像中极低比例的切片,即可实现具有竞争力的分类性能。
原文摘要 · Abstract (English)
This work addresses how to efficiently classify challenging histopathology images, such as gigapixel whole-slide images for cancer diagnostics with image-level annotation. We use images with annotated tumor regions to identify a set of tumor patches and a set of benign patches in a cancerous slide. Due to the variable nature of region of interest the tumor positive regions may refer to an extreme minority of the pixels. This creates an important problem during patch-level classification, where the majority of patches from an image labeled as 'cancerous' are actually tumor-free. This problem is different from semantic segmentation which associates a label to every pixel in an image, because after patch extraction we are only dealing with patch-level labels.Most existing approaches address the data imbalance issue by mitigating the data shortage in minority classes in order to prevent the model from being dominated by the majority classes. These methods include data re-sampling, loss re-weighting, margin modification, and data augmentation. In this work, we mitigate the patch-level class imbalance problem by taking a divide-and-conquer approach. First, we partition the data into sub-groups, and define three separate classification sub-problems based on these data partitions. Then, using an information-theoretic cluster-based sampling of deep image patch features, we sample discriminative patches from the sub-groups. Using these sampled patches, we build corresponding deep models to solve the new classification sub-problems. Finally, we integrate information learned from the respective models to make a final decision on the patches. Our result shows that the proposed approach can perform competitively using a very low percentage of the available patches in a given whole-slide image.
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