用双路U-Net模型自动分割胶质母细胞瘤术后肿瘤,提升准确率7%。
Deep Learning-Based Automated Post-Operative Gross Tumor Volume Segmentation in Glioblastoma Patients
- 设计双并行U-Net,分别输入不同MRI序列组合进行训练
- 在82例数据上实现0.8585的平均Dice系数和4.19毫米的Hausdorff距离
- 特别适合处理术后水肿干扰,临床医生可快速获取精准肿瘤边界
胶质母细胞瘤术后肿瘤体积的精确自动勾画因术后水肿及脑组织变形而极具挑战。本文提出一种新型3D双通道口袋U-Net架构,包含两个并行的口袋U-Net。两个网络分别使用不同的MRI序列子集([T1, T1C, FL] 和 [T2, T1C])进行联合训练,输出结果融合后完成最终预测。基于23名患者共82例术后MRI数据,所有病例均由专家标注肿瘤体积(GTV)作为金标准。采用五折交叉验证评估模型性能,以Dice相似系数与Hausdorff距离为指标。所提双路模型在[ T1, T1C, FL + T2, T1C ]组合下达到0.8585的平均Dice系数和4.1942毫米的Hausdorff距离,优于基准3D口袋U-Net及集成模型。相比传统联合使用全部四类序列(T1, T2, T1C, FL)的方法,该策略将分割准确率提升7%,有效缓解浸润性肿瘤与血管源性水肿带来的干扰。
原文摘要 · Abstract (English)
Precise automated delineation of post-operative gross tumor volume in glioblastoma cases is challenging and time-consuming owing to the presence of edema and the deformed brain tissue resulting from the surgical tumor resection. To develop a model for automated delineation of post-operative gross tumor volumes in glioblastoma, we proposed a novel 3D double pocket U-Net architecture that has two parallel pocket U-Nets. Both U-Nets were trained simultaneously with two different subsets of MRI sequences and the output from the models was combined to do the final prediction. We strategically combined the MRI input sequences (T1, T2, T1C, FL) for model training to achieve improved segmentation accuracy. The dataset comprised 82 post-operative studies collected from 23 glioblastoma patients who underwent maximal safe tumor resection. All had gross tumor volume (GTV) segmentations performed by human experts, and these were used as a reference standard. The results of 3D double pocket U-Net were compared with baseline 3D pocket U-Net models and the ensemble of 3D pocket U-Net models. All the models were evaluated with fivefold cross-validation in terms of the Dice similarity coefficient and Hausdorff distance. Our proposed double U-Net model trained with input sequences [T1, T1C, FL + T2, T1C] achieved a better mean Dice score of 0.8585 and Hausdorff distance of 4.1942 compared to all the baseline models and ensemble models trained. The presence of infiltrating tumors and vasogenic edema in the post-operative MRI scans tends to reduce segmentation accuracy when considering the MRI sequences T1, T2, T1C, and FL together for model training. The double U-Net approach of combining subsets of the MRI sequences as distinct inputs for model training improves segmentation accuracy by 7% when compared with the conventional method of model training with all four sequences.
Thank you to arXiv for use of its open access interoperability. PaperDance 不是 arXiv 官方产品;中文卡片由大模型生成,请以原文为准。