用代谢组数据和深度学习模型预测轻度认知障碍患者恶化风险。
Predicting Deterioration in Mild Cognitive Impairment with Survival Transformers, Extreme Gradient Boosting and Cox Proportional Hazard Modelling
- 结合生存变压器与XGBoost,基于代谢组学数据建模。
- 模型平均C指数达0.85(变压器)和0.80(XGBoost),优于传统Cox模型的0.77。
- 在100次蒙特卡洛模拟中表现更稳定,适合临床风险评估应用。
本文提出一种新方法,利用阿尔茨海默病神经影像计划(ADNI)队列中的代谢组学数据,结合生存变压器与极端梯度提升(XGBoost)模型,预测轻度认知障碍(MCI)患者的认知衰退风险。通过包含100次重复嵌套交叉验证的全面蒙特卡洛模拟,结果显示基于变压器和XGBoost的生存机器学习模型平均C指数分别为0.85和0.80,显著优于传统生存分析的Cox比例风险模型(均值C指数0.77)。此外,从蒙特卡洛模拟中获得的C指数标准差表明,这两种机器学习模型比传统统计模型更具稳定性。研究强调了非侵入性生物标志物与创新建模工具在提升痴呆风险评估准确性方面的潜力,为临床实践和患者管理提供了新路径。
原文摘要 · Abstract (English)
The paper proposes a novel approach of survival transformers and extreme gradient boosting models in predicting cognitive deterioration in individuals with mild cognitive impairment (MCI) using metabolomics data in the ADNI cohort. By leveraging advanced machine learning and transformer-based techniques applied in survival analysis, the proposed approach highlights the potential of these techniques for more accurate early detection and intervention in Alzheimer's dementia disease. This research also underscores the importance of non-invasive biomarkers and innovative modelling tools in enhancing the accuracy of dementia risk assessments, offering new avenues for clinical practice and patient care. A comprehensive Monte Carlo simulation procedure consisting of 100 repetitions of a nested cross-validation in which models were trained and evaluated, indicates that the survival machine learning models based on Transformer and XGBoost achieved the highest mean C-index performances, namely 0.85 and 0.8, respectively, and that they are superior to the conventional survival analysis Cox Proportional Hazards model which achieved a mean C-Index of 0.77. Moreover, based on the standard deviations of the C-Index performances obtained in the Monte Carlo simulation, we established that both survival machine learning models above are more stable than the conventional statistical model.
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