arXiv:2409.16486q-bio.QMcs.AI2024-09

用分子对接与机器学习结合,筛选新冠多靶点抑制剂。

To Explore the Potential Inhibitors against Multitarget Proteins of COVID 19 using In Silico Study

  • 融合分子对接与决策树回归模型预测药物结合能力。
  • 发现5个新抑制剂,结合能达-19.7至-12.6 kcal/mol。
  • 适合药物重定位研究者快速筛选潜在候选药。

新冠疫情引发全球公共卫生危机,病死率极高。药物重定位是节省成本与时间的有效策略,但现有候选药物仍不足。本研究结合分子对接与机器学习回归方法,预测药物对新冠多靶点蛋白的结合亲和力,并构建基于多种机器学习算法的定量结构-活性关系(QSAR)模型。结果显示,决策树回归(DTR)模型在R²与RMSE指标上表现最优。最终筛选出5个新型高潜力抑制剂,其ZINC编号分别为3873365、85432544、8214470、85536956和261494640,结合能范围为-19.7至-12.6 kcal/mol。进一步分析了这些抑制剂的理化与药代动力学性质,评估其治疗潜力。本研究构建了高效整合分子对接与机器学习的筛选框架,为新冠药物研发提供新路径。

原文摘要 · Abstract (English)

The global pandemic due to emergence of COVID 19 has created the unrivaled public health crisis. It has huge morbidity rate never comprehended in the recent decades. Researchers have made many efforts to find the optimal solution of this pandemic. Progressively, drug repurposing is an emergent and powerful strategy with saving cost, time, and labor. Lacking of identified repurposed drug candidates against COVID 19 demands more efforts to explore the potential inhibitors for effective cure. In this study, we used the combination of molecular docking and machine learning regression approaches to explore the potential inhibitors for the treatment of COVID 19. We calculated the binding affinities of these drugs to multitarget proteins using molecular docking process. We perform the QSAR modeling by employing various machine learning regression approaches to identify the potential inhibitors against COVID 19. Our findings with best scores of R2 and RMSE demonstrated that our proposed Decision Tree Regression (DTR) model is the most appropriate model to explore the potential inhibitors. We proposed five novel promising inhibitors with their respective Zinc IDs ZINC (3873365, 85432544, 8214470, 85536956, and 261494640) within the range of -19.7 kcal/mol to -12.6 kcal/mol. We further analyzed the physiochemical and pharmacokinetic properties of these most potent inhibitors to examine their behavior. The analysis of these properties is the key factor to promote an effective cure for public health. Our work constructs an efficient structure with which to probe the potential inhibitors against COVID-19, creating the combination of molecular docking with machine learning regression approaches.

药物重定位分子对接机器学习新冠抑制剂

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