arXiv:2409.19587eess.IVcs.CV2024-09被引 37

用轻量模型自动识别病理切片中六类组织,提升诊断准确性

Efficient Quality Control of Whole Slide Pathology Images with Human-in-the-loop Training

论文配图:Efficient Quality Control of Whole Slide Pathology Images with Human-in-the-loop Training
图 1 · 摘自论文原文
  • 基于人机协同主动学习,仅用单一数据集训练即实现跨器官泛化
  • 在乳腺癌和肺癌数据集上,分类AUC分别提升至0.92和0.93
  • 适用于需要高质量图像筛选的病理AI开发人员

组织病理学全切片图像(WSIs)正被广泛用于开发基于深度学习的诊断方案,尤其在精准肿瘤学中。现有诊断软件常受训练与测试数据中偏差和杂质影响,导致误诊。例如,WSIs包含多种组织区域,其中部分可能与诊断无关。本文提出HistoROI,一种鲁棒且轻量的深度学习分类器,可将WSI划分为六类组织:上皮、间质、淋巴细胞、脂肪、伪影及其他。该模型采用新型人机协同与主动学习范式训练,确保标签高效下的良好泛化能力。即便仅在单一数据集上训练,HistoROI在多个器官间仍保持稳定表现,证明其强泛化性。进一步评估显示,使用HistoROI过滤数据后,基于弱监督学习的神经网络在CAMELYON乳腺癌淋巴结数据集上的病变与正常组织分类AUC从0.88提升至0.92;在TCGA肺腺癌与鳞癌分类任务中,AUC从0.88升至0.93。此外,在93张标注的WSI测试集中,HistoROI在伪影检测上优于HistoQC。模型局限性及未来扩展方向亦被讨论。

原文摘要 · Abstract (English)

Histopathology whole slide images (WSIs) are being widely used to develop deep learning-based diagnostic solutions, especially for precision oncology. Most of these diagnostic softwares are vulnerable to biases and impurities in the training and test data which can lead to inaccurate diagnoses. For instance, WSIs contain multiple types of tissue regions, at least some of which might not be relevant to the diagnosis. We introduce HistoROI, a robust yet lightweight deep learning-based classifier to segregate WSI into six broad tissue regions -- epithelium, stroma, lymphocytes, adipose, artifacts, and miscellaneous. HistoROI is trained using a novel human-in-the-loop and active learning paradigm that ensures variations in training data for labeling-efficient generalization. HistoROI consistently performs well across multiple organs, despite being trained on only a single dataset, demonstrating strong generalization. Further, we have examined the utility of HistoROI in improving the performance of downstream deep learning-based tasks using the CAMELYON breast cancer lymph node and TCGA lung cancer datasets. For the former dataset, the area under the receiver operating characteristic curve (AUC) for metastasis versus normal tissue of a neural network trained using weakly supervised learning increased from 0.88 to 0.92 by filtering the data using HistoROI. Similarly, the AUC increased from 0.88 to 0.93 for the classification between adenocarcinoma and squamous cell carcinoma on the lung cancer dataset. We also found that the performance of the HistoROI improves upon HistoQC for artifact detection on a test dataset of 93 annotated WSIs. The limitations of the proposed model are analyzed, and potential extensions are also discussed.

病理分析深度学习图像分割医学影像

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