arXiv:2410.00944q-bio.QMcs.AI2024-10中稿 · the 6th Workshop o…被引 3

用超图融合多模态数据,提升帕金森病运动症状预测能力

GAMMA-PD: Graph-based Analysis of Multi-Modal Motor Impairment Assessments in Parkinson's Disease

  • 构建患者群体超图,捕捉非成对的高阶关系
  • 在PPMI和私有数据集上显著提升运动障碍预测准确率
  • 可解释特征贡献,辅助临床诊断决策

医疗技术的快速发展带来了影像、基因组和电子健康记录等多模态医疗数据的爆炸式增长。图神经网络(GNN)因其在捕捉成对关系方面的优异表现而被广泛应用,但多模态医疗数据的异质性和复杂性仍使标准GNN难以学习高阶、非成对关系。本文提出GAMMA-PD(基于图的帕金森病多模态运动障碍评估分析),一种新颖的异构超图融合框架,用于多模态临床数据分析。GAMMA-PD通过保留患者特征与症状亚型间的相似性,将影像与非影像数据整合为“超网络”(患者群体图),以维持高阶信息。我们设计了基于特征的注意力加权机制,用于解释特征层面在下游任务中的贡献。我们在帕金森病进展标志物计划(PPMI)和一个私有数据集上评估该方法,证明其在预测帕金森病运动障碍症状方面具有优势。该端到端框架还能学习患者特征子集间的关联,生成与临床相关的疾病和症状解释。源代码已公开于 https://github.com/favour-nerrise/GAMMA-PD。

原文摘要 · Abstract (English)

The rapid advancement of medical technology has led to an exponential increase in multi-modal medical data, including imaging, genomics, and electronic health records (EHRs). Graph neural networks (GNNs) have been widely used to represent this data due to their prominent performance in capturing pairwise relationships. However, the heterogeneity and complexity of multi-modal medical data still pose significant challenges for standard GNNs, which struggle with learning higher-order, non-pairwise relationships. This paper proposes GAMMA-PD (Graph-based Analysis of Multi-modal Motor Impairment Assessments in Parkinson's Disease), a novel heterogeneous hypergraph fusion framework for multi-modal clinical data analysis. GAMMA-PD integrates imaging and non-imaging data into a "hypernetwork" (patient population graph) by preserving higher-order information and similarity between patient profiles and symptom subtypes. We also design a feature-based attention-weighted mechanism to interpret feature-level contributions towards downstream decision tasks. We evaluate our approach with clinical data from the Parkinson's Progression Markers Initiative (PPMI) and a private dataset. We demonstrate gains in predicting motor impairment symptoms in Parkinson's disease. Our end-to-end framework also learns associations between subsets of patient characteristics to generate clinically relevant explanations for disease and symptom profiles. The source code is available at https://github.com/favour-nerrise/GAMMA-PD.

多模态分析超图网络帕金森病可解释性

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