arXiv:2410.02316cs.CVcs.AI2024-10被引 3

CTARR快速精准定位CT图像中的解剖区域,提升后续分析效率与准确性。

CTARR: A fast and robust method for identifying anatomical regions on CT images via atlas registration

  • 基于图谱配准自动识别目标解剖区域并裁剪图像
  • 97.45%-100%保留感兴趣区域,推理时间仅需0.1-0.21秒
  • 适用于分割、分类、配准,显著缩短后续任务耗时

医学图像分析常聚焦于特定解剖位置的结构,而图像中大量非相关区域会增加深度学习模型的计算负担并引发误差。本文提出CTARR,一种通用的CT解剖区域识别方法,作为深度学习图像分析流程的预处理步骤,可自动识别预定义的解剖区域并剔除无关部分。该方法在图像分割中可避免解剖上不合理区域的假阳性,加速推理;在图像分类中生成一致的解剖上下文图像块;在图像配准中作为快速预配准步骤。方法基于图谱注册,能从任意未标注的脑、胸、腹和/或盆腔CT扫描中,以一个或多个边界框形式提取目标解剖区域。我们在六个公开分割挑战数据集上验证了其有效性与鲁棒性:绝大多数情况下(97.45%-100%)保留了感兴趣区域的体素,计算仅需0.1-0.21秒(在深度学习工作站),并将分割运行时间减少2.0-12.7倍。代码已开源:https://github.com/ThomasBudd/ctarr。

原文摘要 · Abstract (English)

Medical image analysis tasks often focus on regions or structures located in a particular location within the patient's body. Often large parts of the image may not be of interest for the image analysis task. When using deep-learning based approaches, this causes an unnecessary increases the computational burden during inference and raises the chance of errors. In this paper, we introduce CTARR, a novel generic method for CT Anatomical Region Recognition. The method serves as a pre-processing step for any deep learning-based CT image analysis pipeline by automatically identifying the pre-defined anatomical region that is relevant for the follow-up task and removing the rest. It can be used in (i) image segmentation to prevent false positives in anatomically implausible regions and speeding up the inference, (ii) image classification to produce image crops that are consistent in their anatomical context, and (iii) image registration by serving as a fast pre-registration step. Our proposed method is based on atlas registration and provides a fast and robust way to crop any anatomical region encoded as one or multiple bounding box(es) from any unlabeled CT scan of the brain, chest, abdomen and/or pelvis. We demonstrate the utility and robustness of the proposed method in the context of medical image segmentation by evaluating it on six datasets of public segmentation challenges. The foreground voxels in the regions of interest are preserved in the vast majority of cases and tasks (97.45-100%) while taking only fractions of a seconds to compute (0.1-0.21s) on a deep learning workstation and greatly reducing the segmentation runtime (2.0-12.7x). Our code is available at https://github.com/ThomasBudd/ctarr.

CT图像解剖识别图谱配准预处理

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