用相似性学习与图扩散法,从脑影像中发现阿尔茨海默病新亚型。
Clustering Alzheimer's Disease Subtypes via Similarity Learning and Graph Diffusion
- 结合多核相似性学习与图扩散,挖掘脑皮层厚度数据中的亚型模式。
- 识别出5种在生物标志物和认知状态上差异显著的疾病亚型。
- 适用于神经科学、精准医疗研究者,助力个性化诊疗策略设计。
阿尔茨海默病(AD)是一种复杂的神经退行性疾病,全球影响数百万人。由于其异质性,诊断与治疗面临重大挑战。近年来,研究者致力于识别具有同质特征的AD亚型以应对这些难题。本研究利用无监督聚类方法,结合相似性学习与图扩散技术,基于829名阿尔茨海默病患者及轻度认知障碍(MCI)患者的磁共振成像(MRI)脑皮层厚度数据,识别具有独特临床特征与病理基础的亚型。我们采用SIMLR多核相似性学习框架,并引入图扩散提升鲁棒性。该方法此前未用于AD亚型分析,但表现显著优于多种常用聚类算法。结果显示,图扩散有效降低了噪声对亚型识别的影响,最终分离出5个在生物标志物、认知状态及其他临床特征上明显不同的亚型。为进一步验证,我们开展了遗传关联分析,成功揭示了不同亚型的潜在遗传基础。代码已公开于:https://github.com/PennShenLab/AD-SIMLR。
原文摘要 · Abstract (English)
Alzheimer's disease (AD) is a complex neurodegenerative disorder that affects millions of people worldwide. Due to the heterogeneous nature of AD, its diagnosis and treatment pose critical challenges. Consequently, there is a growing research interest in identifying homogeneous AD subtypes that can assist in addressing these challenges in recent years. In this study, we aim to identify subtypes of AD that represent distinctive clinical features and underlying pathology by utilizing unsupervised clustering with graph diffusion and similarity learning. We adopted SIMLR, a multi-kernel similarity learning framework, and graph diffusion to perform clustering on a group of 829 patients with AD and mild cognitive impairment (MCI, a prodromal stage of AD) based on their cortical thickness measurements extracted from magnetic resonance imaging (MRI) scans. Although the clustering approach we utilized has not been explored for the task of AD subtyping before, it demonstrated significantly better performance than several commonly used clustering methods. Specifically, we showed the power of graph diffusion in reducing the effects of noise in the subtype detection. Our results revealed five subtypes that differed remarkably in their biomarkers, cognitive status, and some other clinical features. To evaluate the resultant subtypes further, a genetic association study was carried out and successfully identified potential genetic underpinnings of different AD subtypes. Our source code is available at: https://github.com/PennShenLab/AD-SIMLR.
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