arXiv:2410.05780q-bio.QMcs.LG2024-10ICLR被引 18

整理公开糖尿病监测数据集,建立预测基准,推动血糖预测研究协同进步。

GlucoBench: Curated List of Continuous Glucose Monitoring Datasets with Prediction Benchmarks

  • 整合多个公开连续血糖监测数据集,统一评估标准。
  • 提供基准模型与性能基线,支持方法客观对比。
  • 适合医疗AI、糖尿病管理研究者使用。

糖尿病发病率上升亟需创新管理方法。连续血糖监测(CGM)设备可定期测量血糖水平,揭示日常血糖波动规律。基于CGM数据预测血糖轨迹,有助于优化人工胰腺系统,并帮助患者提前调整以维持理想血糖范围。尽管已有众多预测方法提出,但多数在小规模私有数据集上评估,导致复现困难、研究分散、临床应用有限。缺乏标准化任务与系统性比较,使研究进展缓慢。为此,我们构建了综合性资源:(1) 整合公开可用的CGM数据集,提升可复现性与可及性;(2) 提供标准化预测任务列表,统一研究目标;(3) 设立基准模型与基线性能,便于客观评估新方法;(4) 分析影响模型表现的关键因素,指导模型开发。该资源旨在推动基于CGM的血糖预测研究协同发展。代码已开源:github.com/IrinaStatsLab/GlucoBench。

原文摘要 · Abstract (English)

The rising rates of diabetes necessitate innovative methods for its management. Continuous glucose monitors (CGM) are small medical devices that measure blood glucose levels at regular intervals providing insights into daily patterns of glucose variation. Forecasting of glucose trajectories based on CGM data holds the potential to substantially improve diabetes management, by both refining artificial pancreas systems and enabling individuals to make adjustments based on predictions to maintain optimal glycemic range.Despite numerous methods proposed for CGM-based glucose trajectory prediction, these methods are typically evaluated on small, private datasets, impeding reproducibility, further research, and practical adoption. The absence of standardized prediction tasks and systematic comparisons between methods has led to uncoordinated research efforts, obstructing the identification of optimal tools for tackling specific challenges. As a result, only a limited number of prediction methods have been implemented in clinical practice. To address these challenges, we present a comprehensive resource that provides (1) a consolidated repository of curated publicly available CGM datasets to foster reproducibility and accessibility; (2) a standardized task list to unify research objectives and facilitate coordinated efforts; (3) a set of benchmark models with established baseline performance, enabling the research community to objectively gauge new methods' efficacy; and (4) a detailed analysis of performance-influencing factors for model development. We anticipate these resources to propel collaborative research endeavors in the critical domain of CGM-based glucose predictions. {Our code is available online at github.com/IrinaStatsLab/GlucoBench.

血糖预测医疗AI数据集糖尿病

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