用气象等外部因素改进流感传播率预测,提升疫情预报准确性。
A model learning framework for inferring the dynamics of transmission rate depending on exogenous variables for epidemic forecasts
- 融合神经微分方程与SEIR模型,基于气象和病毒特征动态推断传播率。
- 在意大利2010–2020年流感数据上,测试集误差低且结果符合已知气候影响规律。
- 可自适应调整疫情波段特征,适合需要高精度长期预测的研究者使用。
本文提出一种新型科学机器学习框架,用于重构受外部变量(如气象条件和毒株特性)影响的隐含传播率动态,其不准确外推会显著降低疫情预测质量。模型结合数据驱动层与物理机制层:数据驱动层采用神经微分方程,根据气象数据与波段特异性潜在参数学习传播率动态;物理机制层为标准SEIR模型,以传播率为输入。训练采用端到端策略,损失函数衡量实际感染数与SEIR模型预测值之间的差异。在合成案例及基于意大利2010–2020年气象数据(温度、湿度)与流感数据的真实案例中,均实现低泛化误差,并验证了重建模型与已有气候影响结论的高度一致性。进一步引入数据同化策略以适应特定疫情波段特征,并对网络超参数进行敏感性测试。
原文摘要 · Abstract (English)
In this work, we aim to formalize a novel scientific machine learning framework to reconstruct the hidden dynamics of the transmission rate, whose inaccurate extrapolation can significantly impair the quality of the epidemic forecasts, by incorporating the influence of exogenous variables (such as environmental conditions and strain-specific characteristics). We propose an hybrid model that blends a data-driven layer with a physics-based one. The data-driven layer is based on a neural ordinary differential equation that learns the dynamics of the transmission rate, conditioned on the meteorological data and wave-specific latent parameters. The physics-based layer, instead, consists of a standard SEIR compartmental model, wherein the transmission rate represents an input. The learning strategy follows an end-to-end approach: the loss function quantifies the mismatch between the actual numbers of infections and its numerical prediction obtained from the SEIR model incorporating as an input the transmission rate predicted by the neural ordinary differential equation. We validate this original approach using both a synthetic test case and a realistic test case based on meteorological data (temperature and humidity) and influenza data from Italy between 2010 and 2020. In both scenarios, we achieve low generalization error on the test set and observe strong alignment between the reconstructed model and established findings on the influence of meteorological factors on epidemic spread. Finally, we implement a data assimilation strategy to adapt the neural equation to the specific characteristics of an epidemic wave under investigation, and we conduct sensitivity tests on the network hyperparameters.
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