arXiv:2410.11910q-bio.GNcs.AI2024-10综述被引 9

解析多组学数据中深度学习模型的决策逻辑,让医生看得懂、用得上。

Explainable AI Methods for Multi-Omics Analysis: A Survey

  • 用可解释AI揭示深度学习在多组学中的决策依据
  • 提升模型透明度,助力临床对复杂疾病的研究
  • 适合生物医学研究者与临床医生参考

高通量技术的发展推动了从传统假设驱动向数据驱动范式的转变。多组学指对基因组学、蛋白质组学、转录组学、代谢组学和微生物组学等多源生物数据的整合分析,通过捕捉不同层次的生物学信息,实现对生物系统的全面理解。深度学习被广泛用于整合多组学数据,揭示分子相互作用,推动复杂疾病研究。然而,这些模型因层级繁多、非线性关系复杂,常表现为黑箱,缺乏决策透明性。为此,可解释人工智能(xAI)方法至关重要,它能构建透明模型,帮助临床人员更有效地解读和应用复杂数据。本文综述了xAI如何提升深度学习在多组学研究中的可解释性,强调其为临床提供清晰洞见的潜力,从而促进模型在临床场景中的有效落地。

原文摘要 · Abstract (English)

Advancements in high-throughput technologies have led to a shift from traditional hypothesis-driven methodologies to data-driven approaches. Multi-omics refers to the integrative analysis of data derived from multiple 'omes', such as genomics, proteomics, transcriptomics, metabolomics, and microbiomics. This approach enables a comprehensive understanding of biological systems by capturing different layers of biological information. Deep learning methods are increasingly utilized to integrate multi-omics data, offering insights into molecular interactions and enhancing research into complex diseases. However, these models, with their numerous interconnected layers and nonlinear relationships, often function as black boxes, lacking transparency in decision-making processes. To overcome this challenge, explainable artificial intelligence (xAI) methods are crucial for creating transparent models that allow clinicians to interpret and work with complex data more effectively. This review explores how xAI can improve the interpretability of deep learning models in multi-omics research, highlighting its potential to provide clinicians with clear insights, thereby facilitating the effective application of such models in clinical settings.

可解释AI多组学深度学习临床应用

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