arXiv:2410.13685cs.CV2024-10

用AI从明场图像预测牛肌肉干细胞荧光标记,实现无标签质量评估

Label-free prediction of fluorescence markers in bovine satellite cells using deep learning

  • 基于U-Net的深度学习模型,从单张明场图像预测DAPI和Pax7荧光信号
  • DAPI预测相关性达0.92,Pax7因细胞异质性导致预测波动更大
  • 通过去噪与可视化增强提升结果可解释性,适合生物制造质检场景

评估牛卫星细胞(BSCs)质量对培养肉产业至关重要,旨在应对全球粮食可持续性挑战。本研究开发了一种无标签方法,利用深度学习从单张明场显微图像预测BSCs中两个关键生物标志物DAPI和Pax7的荧光信号。采用基于U-Net的CNN模型,结合荧光去噪预处理流程以提升预测性能与一致性。共使用48个生物学重复样本,通过皮尔逊相关系数和结构相似性(SSIM)进行评估。模型在DAPI预测上表现更优(相关系数0.92),而Pax7预测变异较大,反映了真实的生物异质性。通过色彩映射与图像叠加等增强可视化技术,提升了预测结果的可解释性。研究证明数据预处理的重要性,并展示了深度学习在非侵入式、无标签评估中的潜力,为培养肉产业提供可靠且可操作的AI评估方案。

原文摘要 · Abstract (English)

Assessing the quality of bovine satellite cells (BSCs) is essential for the cultivated meat industry, which aims to address global food sustainability challenges. This study aims to develop a label-free method for predicting fluorescence markers in isolated BSCs using deep learning. We employed a U-Net-based CNN model to predict multiple fluorescence signals from a single bright-field microscopy image of cell culture. Two key biomarkers, DAPI and Pax7, were used to determine the abundance and quality of BSCs. The image pre-processing pipeline included fluorescence denoising to improve prediction performance and consistency. A total of 48 biological replicates were used, with statistical performance metrics such as Pearson correlation coefficient and SSIM employed for model evaluation. The model exhibited better performance with DAPI predictions due to uniform staining. Pax7 predictions were more variable, reflecting biological heterogeneity. Enhanced visualization techniques, including color mapping and image overlay, improved the interpretability of the predictions by providing better contextual and perceptual information. The findings highlight the importance of data pre-processing and demonstrate the potential of deep learning to advance non-invasive, label-free assessment techniques in the cultivated meat industry, paving the way for reliable and actionable AI-driven evaluations.

细胞成像深度学习无标签预测培养肉

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