用联合嵌入预测架构自监督预训练,提升心电图分类性能
Self-Supervised Pre-Training with Joint-Embedding Predictive Architecture Boosts ECG Classification Performance
- 采用无需数据增强的联合嵌入预测架构进行自监督学习
- 在PTB-XL数据集上达到0.945的AUC,优于现有方法
- 适合缺乏标注数据的心电图分析任务,尤其擅长小样本场景
心律失常的准确诊断依赖于对心电图(ECG)的解读,其捕捉心脏电活动。通过机器学习自动化该过程面临挑战,因需大量标注数据,而这些数据收集困难且成本高。为此,通常采用迁移学习:模型在大规模数据集上预训练,再在少量标注数据上微调。自监督学习已成为主流预训练方法,使模型能从无标签数据中学习有意义表示。本文探索了联合嵌入预测架构(JEPA)在心电图数据上的自监督学习应用。与依赖手工数据增强的方法不同,JEPA不依赖此类操作;与生成式方法不同,它预测潜在特征而非重构输入。我们整合十个公开心电数据库,构建了一个超百万记录的无监督预训练数据集。使用JEPA在该数据集上预训练视觉变换器,并在多个PTB-XL基准上微调。结果表明,JEPA优于现有基于不变性与生成式的方法,在PTB-XL全部判读任务上达到0.945的AUC。线性评估显示其始终学习到最高质量的表征,即使无额外数据也具优势。
原文摘要 · Abstract (English)
Accurate diagnosis of heart arrhythmias requires the interpretation of electrocardiograms (ECG), which capture the electrical activity of the heart. Automating this process through machine learning is challenging due to the need for large annotated datasets, which are difficult and costly to collect. To address this issue, transfer learning is often employed, where models are pre-trained on large datasets and fine-tuned for specific ECG classification tasks with limited labeled data. Self-supervised learning has become a widely adopted pre-training method, enabling models to learn meaningful representations from unlabeled datasets. In this work, we explore the joint-embedding predictive architecture (JEPA) for self-supervised learning from ECG data. Unlike invariance-based methods, JEPA does not rely on hand-crafted data augmentations, and unlike generative methods, it predicts latent features rather than reconstructing input data. We create a large unsupervised pre-training dataset by combining ten public ECG databases, amounting to over one million records. We pre-train Vision Transformers using JEPA on this dataset and fine-tune them on various PTB-XL benchmarks. Our results show that JEPA outperforms existing invariance-based and generative approaches, achieving an AUC of 0.945 on the PTB-XL all statements task. JEPA consistently learns the highest quality representations, as demonstrated in linear evaluations, and proves advantageous for pre-training even in the absence of additional data.
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