arXiv:2410.14983cs.CV2024-10中稿 · oral presentation …被引 1

用双流网络自动评估心肌细胞肌小节成熟度,准确率提升3.7%。

D-SarcNet: A Dual-stream Deep Learning Framework for Automatic Analysis of Sarcomere Structures in Fluorescently Labeled hiPSC-CMs

  • 双流结构融合全局与局部特征,提升图像分析能力
  • 在公开数据集上相关性达0.868,优于之前最佳方法3.7%
  • 适合心血管研究、药物筛选中的高通量细胞评估

人诱导多能干细胞来源的心肌细胞(hiPSC-CMs)是心血管研究与临床应用的重要工具。肌小节组织的成熟对细胞收缩功能和结构完整性至关重要。传统人工标注与特征提取方法耗时费力,难以支持高通量分析。为此,我们提出D-SarcNet,一种双流深度学习框架,以荧光标记的hiPSC-CM单细胞图像为输入,输出肌小节结构组织程度评分(1.0–5.0)。该框架结合快速傅里叶变换(FFT)、深度学习生成的局部模式及梯度幅值,同时捕捉全局与局部结构信息。在艾伦细胞科学研究所公开数据集上的实验表明,该方法不仅达到0.868的斯皮尔曼相关系数,较前人最优结果提升3.7%,且在均方误差(MSE)、平均绝对误差(MAE)和决定系数(R²)等指标上均有显著提升。消融实验进一步验证了融合全局与局部信息对模型识别关键视觉特征的重要性。

原文摘要 · Abstract (English)

Human-induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) are a powerful tool in advancing cardiovascular research and clinical applications. The maturation of sarcomere organization in hiPSC-CMs is crucial, as it supports the contractile function and structural integrity of these cells. Traditional methods for assessing this maturation like manual annotation and feature extraction are labor-intensive, time-consuming, and unsuitable for high-throughput analysis. To address this, we propose D-SarcNet, a dual-stream deep learning framework that takes fluorescent hiPSC-CM single-cell images as input and outputs the stage of the sarcomere structural organization on a scale from 1.0 to 5.0. The framework also integrates Fast Fourier Transform (FFT), deep learning-generated local patterns, and gradient magnitude to capture detailed structural information at both global and local levels. Experiments on a publicly available dataset from the Allen Institute for Cell Science show that the proposed approach not only achieves a Spearman correlation of 0.868 marking a 3.7% improvement over the previous state-of-the-art but also significantly enhances other key performance metrics, including MSE, MAE, and R2 score. Beyond establishing a new state-of-the-art in sarcomere structure assessment from hiPSC-CM images, our ablation studies highlight the significance of integrating global and local information to enhance deep learning networks ability to discern and learn vital visual features of sarcomere structure.

心肌细胞肌小节分析深度学习图像分割

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