arXiv:2410.22365eess.IVcs.AI2024-10被引 5

首个基于深度学习的fUS血管分割工具,可无创区分动静脉并量化血容量变化。

Vascular Segmentation of Functional Ultrasound Images using Deep Learning

  • 用ULM自动标注数据训练UNet模型,实现fUS图像中血管分段。
  • 在100帧数据上达90%准确率、71%F1分数、0.59交并比。
  • 适用于静息态和视觉刺激状态,适合脑血管功能研究者。

医学图像分割是重要基础任务。尽管MRI、CT、PET等成像模态已受益于深度学习分割技术,但功能性超声(fUS)等新兴模态进展有限。fUS是一种非侵入性方法,能以高时空分辨率测量脑血容量(CBV)变化。然而,由于同一像素内动静脉血流方向相反,难以区分。超声定位显微镜(ULM)虽可提高分辨率,但需注射微泡造影剂,具有侵入性且无法动态量化CBV。本文首次提出基于深度学习的fUS图像分割方法,利用ULM自动标注数据,区分不同血管区室信号,并支持动态CBV量化。我们在大鼠脑fUS图像上评估多种UNet架构,仅用100个时间帧即达到90%准确率、71% F1分数、0.59交并比(IoU),性能媲美其他成像模态中的管状结构分割。基于静息态数据训练的模型在视觉刺激图像上表现良好,具备强泛化能力。该方法为ULM提供了一种非侵入、低成本替代方案,提升了fUS数据解读能力。预测信号与真实血管区室间在线性相关系数上表现优异,证明其能准确捕捉血流动力学特征。

原文摘要 · Abstract (English)

Segmentation of medical images is a fundamental task with numerous applications. While MRI, CT, and PET modalities have significantly benefited from deep learning segmentation techniques, more recent modalities, like functional ultrasound (fUS), have seen limited progress. fUS is a non invasive imaging method that measures changes in cerebral blood volume (CBV) with high spatio-temporal resolution. However, distinguishing arterioles from venules in fUS is challenging due to opposing blood flow directions within the same pixel. Ultrasound localization microscopy (ULM) can enhance resolution by tracking microbubble contrast agents but is invasive, and lacks dynamic CBV quantification. In this paper, we introduce the first deep learning-based segmentation tool for fUS images, capable of differentiating signals from different vascular compartments, based on ULM automatic annotation and enabling dynamic CBV quantification. We evaluate various UNet architectures on fUS images of rat brains, achieving competitive segmentation performance, with 90% accuracy, a 71% F1 score, and an IoU of 0.59, using only 100 temporal frames from a fUS stack. These results are comparable to those from tubular structure segmentation in other imaging modalities. Additionally, models trained on resting-state data generalize well to images captured during visual stimulation, highlighting robustness. This work offers a non-invasive, cost-effective alternative to ULM, enhancing fUS data interpretation and improving understanding of vessel function. Our pipeline shows high linear correlation coefficients between signals from predicted and actual compartments in both cortical and deeper regions, showcasing its ability to accurately capture blood flow dynamics.

血管分割功能性超声深度学习脑血容量

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