arXiv:2411.00552cs.CV2024-11ECCV被引 9

构建百万级微生物单细胞追踪数据集,揭示实验参数对追踪效果的关键影响。

Tracking one-in-a-million: Large-scale benchmark for microbial single-cell tracking with experiment-aware robustness metrics

  • 提出融合成像间隔与细胞数量的实验感知评估指标
  • 发现高帧率间隔和大细胞群体会显著降低追踪准确率
  • 适合生物图像分析、算法鲁棒性研究者使用

在活细胞时间序列成像中追踪细胞发育过程,能揭示单细胞行为,具有重要生物医学与生物技术应用价值。在微生物活细胞成像(MLCI)中,需在数十个生长细胞群中检测并追踪几十到数千个细胞。追踪挑战受成像间隔和最大细胞数等实验参数显著影响。目前MLCI缺乏广泛可用的基准数据集,且这些参数对追踪性能的影响尚不明确。为此,我们构建了当前最大的公开可获取、已标注的MLCI数据集,包含超过140万细胞实例、2.9万个细胞轨迹和1.4万个细胞分裂事件。基于该数据集,我们将现有追踪指标扩展为包含成像与实验参数的实验感知指标。结果表明,现有追踪方法严重依赖实验参数设置,在高成像间隔和大细胞群组下性能明显下降。本基准量化了实验参数对追踪质量的影响,为开发跨参数条件泛化的数据驱动方法提供了可能。数据集已公开于 https://zenodo.org/doi/10.5281/zenodo.7260136。

原文摘要 · Abstract (English)

Tracking the development of living cells in live-cell time-lapses reveals crucial insights into single-cell behavior and presents tremendous potential for biomedical and biotechnological applications. In microbial live-cell imaging (MLCI), a few to thousands of cells have to be detected and tracked within dozens of growing cell colonies. The challenge of tracking cells is heavily influenced by the experiment parameters, namely the imaging interval and maximal cell number. For now, tracking benchmarks are not widely available in MLCI and the effect of these parameters on the tracking performance are not yet known. Therefore, we present the largest publicly available and annotated dataset for MLCI, containing more than 1.4 million cell instances, 29k cell tracks, and 14k cell divisions. With this dataset at hand, we generalize existing tracking metrics to incorporate relevant imaging and experiment parameters into experiment-aware metrics. These metrics reveal that current cell tracking methods crucially depend on the choice of the experiment parameters, where their performance deteriorates at high imaging intervals and large cell colonies. Thus, our new benchmark quantifies the influence of experiment parameters on the tracking quality, and gives the opportunity to develop new data-driven methods that generalize across imaging and experiment parameters. The benchmark dataset is publicly available at https://zenodo.org/doi/10.5281/zenodo.7260136.

单细胞追踪生物图像分析实验感知评估数据集

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