arXiv:2411.05167cs.LGcs.CR2024-11中稿 · SIMBig 2024被引 1

通过迭代协作保护隐私,实现新冠基因序列分类

EPIC: Enhancing Privacy through Iterative Collaboration

  • 将模型分置本地与中心端,通过迭代协作训练
  • 无需传输原始数据,仍能准确分类新冠基因序列谱系
  • 适合医疗数据隐私敏感场景的联邦学习应用

基因组技术进步带来大量病毒(如SARS-CoV-2)序列数据,推动机器学习在生物信息学中的应用。传统机器学习需集中收集和处理数据,在真实医疗场景中面临隐私、所有权和严格监管问题。联邦学习(FL)通过中央聚合服务器和共享全局模型,实现知识提取而不传输原始数据,保护隐私。本文提出一种新型隐私增强架构EPIC,将网络分布于本地与中心服务器之间,用于解决监督分类问题——在不直接传输原始序列数据的前提下,估计SARS-CoV-2基因组序列谱系。目标是构建通用去中心化优化框架,使不同数据持有者协同工作并收敛至单一预测模型。实验表明,隐私保护策略可与聚合方法结合使用,对学习收敛性影响极小。最后,文章指出基于FL的医疗应用仍存在若干待研究问题与前景。

原文摘要 · Abstract (English)

Advancements in genomics technology lead to a rising volume of viral (e.g., SARS-CoV-2) sequence data, resulting in increased usage of machine learning (ML) in bioinformatics. Traditional ML techniques require centralized data collection and processing, posing challenges in realistic healthcare scenarios. Additionally, privacy, ownership, and stringent regulation issues exist when pooling medical data into centralized storage to train a powerful deep learning (DL) model. The Federated learning (FL) approach overcomes such issues by setting up a central aggregator server and a shared global model. It also facilitates data privacy by extracting knowledge while keeping the actual data private. This work proposes a cutting-edge Privacy enhancement through Iterative Collaboration (EPIC) architecture. The network is divided and distributed between local and centralized servers. We demonstrate the EPIC approach to resolve a supervised classification problem to estimate SARS-CoV-2 genomic sequence data lineage without explicitly transferring raw sequence data. We aim to create a universal decentralized optimization framework that allows various data holders to work together and converge to a single predictive model. The findings demonstrate that privacy-preserving strategies can be successfully used with aggregation approaches without materially altering the degree of learning convergence. Finally, we highlight a few potential issues and prospects for study in FL-based approaches to healthcare applications.

联邦学习基因组分析隐私保护

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