从MRI谱数据直接发现可解释的生物力学模型。
Data-driven discovery of mechanical models directly from MRI spectral data
- 结合光谱动态框架与SINDy方法,联合重建位移场并发现动力学模型。
- 在5种非线性微分方程驱动的动态幻影上验证,性能优于两步法。
- 无需假设周期运动,适合临床MRI数据的实时建模需求。
寻找可解释的生物力学模型有助于理解器官在生理和疾病状态下的功能。然而,从活体组织中识别通用的动力学模型仍具挑战性。本概念验证研究提出一种从实验获取的欠采样MRI谱数据中进行数据驱动建模的重构框架。该方法利用先前发展的光谱-动态框架,实现高时空分辨率的位移场重建,从而支持模型识别。所提框架将此方法与基于稀疏非线性动力学识别(SINDy)的数据驱动建模相结合,构建了位移场重构与模型识别之间的协同关系。该方法不依赖运动的周期性,成功在临床MRI扫描仪采集的动态幻影数据上验证。该幻影按5种不同(非线性)常微分方程编程运动。相比先仅用欠采样数据重建位移场、再进行模型发现的两步法,本框架表现更优。本研究为活体模型的数据驱动发现迈出了第一步。
原文摘要 · Abstract (English)
Finding interpretable biomechanical models can provide insight into the functionality of organs with regard to physiology and disease. However, identifying broadly applicable dynamical models for in vivo tissue remains challenging. In this proof of concept study we propose a reconstruction framework for data-driven discovery of dynamical models from experimentally obtained undersampled MRI spectral data. The method makes use of the previously developed spectro-dynamic framework which allows for reconstruction of displacement fields at high spatial and temporal resolution required for model identification. The proposed framework combines this method with data-driven discovery of interpretable models using Sparse Identification of Non-linear Dynamics (SINDy). The design of the reconstruction algorithm is such that a symbiotic relation between the reconstruction of the displacement fields and the model identification is created. Our method does not rely on periodicity of the motion. It is successfully validated using spectral data of a dynamic phantom gathered on a clinical MRI scanner. The dynamic phantom is programmed to perform motion adhering to 5 different (non-linear) ordinary differential equations. The proposed framework performed better than a 2-step approach where the displacement fields were first reconstructed from the undersampled data without any information on the model, followed by data-driven discovery of the model using the reconstructed displacement fields. This study serves as a first step in the direction of data-driven discovery of in vivo models.
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