arXiv:2411.09593eess.IVcs.AI2024-11被引 9

7T脑血管成像数据集公开,助力小血管精准分割

SMILE-UHURA Challenge -- Small Vessel Segmentation at Mesoscopic Scale from Ultra-High Resolution 7T Magnetic Resonance Angiograms

  • 构建7T MRI时飞血管影像标注数据集,支持小血管分割研究
  • 深度学习方法在两个数据集上平均Dice达0.804,最高0.838
  • 适合脑血管疾病分析与医学图像分割方向的研究者

人类大脑通过复杂的血管网络获取营养和氧气。微米尺度的小血管病变是脑血供中的关键脆弱环节,可导致脑小血管病等严重疾病。7特斯拉磁共振成像系统实现了更高分辨率的图像采集,使脑内小血管可视化成为可能。然而,缺乏公开标注数据集制约了机器学习分割算法的发展。为此,组织了SMILE-UHURA挑战赛,与ISBI 2023联合举办于哥伦比亚卡塔赫纳。该挑战赛提供基于7T MRI的时飞血管造影(ToF MRA)标注数据集,由自动化预分割结合人工精细修正生成。本文对比了16种提交方法及2种基线方法在两个数据集上的表现:训练数据集的保留测试集(标签保密)与独立的7T ToF MRA数据集(输入与标签均保密)。结果显示,多数基于训练数据集训练的深度学习方法表现可靠,两个数据集的Dice分数分别为0.838 ± 0.066 和 0.716 ± 0.125,平均性能最高达0.804 ± 0.15。

原文摘要 · Abstract (English)

The human brain receives nutrients and oxygen through an intricate network of blood vessels. Pathology affecting small vessels, at the mesoscopic scale, represents a critical vulnerability within the cerebral blood supply and can lead to severe conditions, such as Cerebral Small Vessel Diseases. The advent of 7 Tesla MRI systems has enabled the acquisition of higher spatial resolution images, making it possible to visualise such vessels in the brain. However, the lack of publicly available annotated datasets has impeded the development of robust, machine learning-driven segmentation algorithms. To address this, the SMILE-UHURA challenge was organised. This challenge, held in conjunction with the ISBI 2023, in Cartagena de Indias, Colombia, aimed to provide a platform for researchers working on related topics. The SMILE-UHURA challenge addresses the gap in publicly available annotated datasets by providing an annotated dataset of Time-of-Flight angiography acquired with 7T MRI. This dataset was created through a combination of automated pre-segmentation and extensive manual refinement. In this manuscript, sixteen submitted methods and two baseline methods are compared both quantitatively and qualitatively on two different datasets: held-out test MRAs from the same dataset as the training data (with labels kept secret) and a separate 7T ToF MRA dataset where both input volumes and labels are kept secret. The results demonstrate that most of the submitted deep learning methods, trained on the provided training dataset, achieved reliable segmentation performance. Dice scores reached up to 0.838 $\pm$ 0.066 and 0.716 $\pm$ 0.125 on the respective datasets, with an average performance of up to 0.804 $\pm$ 0.15.

血管分割7T MRI医学图像深度学习

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