arXiv:2411.09767eess.IVcs.AI2024-11被引 2

用深度学习分析胎盘组织切片,自动诊断胎儿炎症反应。

Deep Learning for Fetal Inflammatory Response Diagnosis in the Umbilical Cord

  • 基于注意力机制的全切片学习模型,结合病理图像预训练
  • 使用UNI预训练模型的集成模型平衡准确率达83.6%
  • 可辅助病理医生减少诊断差异,适合新生儿感染风险筛查

脐带炎症可能由宫内上行感染或其他炎症刺激引起。急性胎儿炎症反应(FIR)以胎儿中性粒细胞浸润脐带为特征,与新生儿败血症或胎儿炎症反应综合征相关。本研究利用数字病理学中的深度学习方法,对4100张脐带H&E染色全切片图像进行FIR分类。通过电子健康记录提取胎盘诊断信息,采用基于注意力的全切片学习模型,对比了在ImageNet上预训练的ConvNeXtXLarge与在组织病理图像上预训练的UNI模型。训练多轮后构建集成模型,使用UNI预训练的集成模型在测试集上达到0.836的平衡准确率,显著优于使用ConvNeXtXLarge的0.7209。热图显示高精度模型在FIR 2病例中聚焦动脉炎区域,在FIR 1中则关注华通胶内活化样间质区,其他模型则关注脐带血管。本研究构建了基于胎盘组织图像的FIR诊断模型,有助于降低病理医生间的诊断差异,未来可用于识别系统性炎症或早发性新生儿败血症高风险婴儿。

原文摘要 · Abstract (English)

Inflammation of the umbilical cord can be seen as a result of ascending intrauterine infection or other inflammatory stimuli. Acute fetal inflammatory response (FIR) is characterized by infiltration of the umbilical cord by fetal neutrophils, and can be associated with neonatal sepsis or fetal inflammatory response syndrome. Recent advances in deep learning in digital pathology have demonstrated favorable performance across a wide range of clinical tasks, such as diagnosis and prognosis. In this study we classified FIR from whole slide images (WSI). We digitized 4100 histological slides of umbilical cord stained with hematoxylin and eosin(H&E) and extracted placental diagnoses from the electronic health record. We build models using attention-based whole slide learning models. We compared strategies between features extracted by a model (ConvNeXtXLarge) pretrained on non-medical images (ImageNet), and one pretrained using histopathology images (UNI). We trained multiple iterations of each model and combined them into an ensemble. The predictions from the ensemble of models trained using UNI achieved an overall balanced accuracy of 0.836 on the test dataset. In comparison, the ensembled predictions using ConvNeXtXLarge had a lower balanced accuracy of 0.7209. Heatmaps generated from top accuracy model appropriately highlighted arteritis in cases of FIR 2. In FIR 1, the highest performing model assigned high attention to areas of activated-appearing stroma in Wharton's Jelly. However, other high-performing models assigned attention to umbilical vessels. We developed models for diagnosis of FIR from placental histology images, helping reduce interobserver variability among pathologists. Future work may examine the utility of these models for identifying infants at risk of systemic inflammatory response or early onset neonatal sepsis.

医学影像深度学习病理诊断新生儿

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