arXiv:2411.15390cs.CV2024-11

自动监测果蝇发育全过程,无需人工干预。

The Hatching-Box: A Novel System for Automated Monitoring and Quantification of Drosophila melanogaster Developmental Behavior

  • 自研成像系统结合追踪算法,自动识别幼虫、蛹和成虫。
  • 在近47万张图像上验证,准确复现野生型与突变体的羽化周期差异。
  • 可追踪个体生命周期并分析群体行为,适合大规模培养监控。

本文提出Hatching-Box系统,一种新型成像与分析方案,可在标准果蝇培养管中自动监测并量化黑腹果蝇(Drosophila melanogaster)的发育行为,使传统人工实验成为历史。该系统通过定制化成像硬件与专用检测追踪算法,实现对幼虫、充填/空蛹及成虫的多日连续量化。凭借低成本、可复制的设计及通用客户端/服务器软件架构,系统可扩展至同时监控任意数量培养管。我们在包含近47万标注对象的精选图像数据集上评估系统,并开展多项真实实验研究。成功复现了经典昼夜节律实验结果,通过比较野生型与clock突变体per^{short}、per^{long}和per^0的羽化时间,全程无需人工参与。此外,系统还能提取群体行为信息,并重建单个个体的完整生命周期。这些结果不仅证明其适用于长期实验,也展示了在常规培养过程中自动化监控的显著优势。

原文摘要 · Abstract (English)

In this paper we propose the Hatching-Box, a novel imaging and analysis system to automatically monitor and quantify the developmental behavior of Drosophila in standard rearing vials and during regular rearing routines, rendering explicit experiments obsolete. This is achieved by combining custom tailored imaging hardware with dedicated detection and tracking algorithms, enabling the quantification of larvae, filled/empty pupae and flies over multiple days. Given the affordable and reproducible design of the Hatching-Box in combination with our generic client/server-based software, the system can easily be scaled to monitor an arbitrary amount of rearing vials simultaneously. We evaluated our system on a curated image dataset comprising nearly 470,000 annotated objects and performed several studies on real world experiments. We successfully reproduced results from well-established circadian experiments by comparing the eclosion periods of wild type flies to the clock mutants $\textit{per}^{short}$, $\textit{per}^{long}$ and $\textit{per}^0$ without involvement of any manual labor. Furthermore we show, that the Hatching-Box is able to extract additional information about group behavior as well as to reconstruct the whole life-cycle of the individual specimens. These results not only demonstrate the applicability of our system for long-term experiments but also indicate its benefits for automated monitoring in the general cultivation process.

果蝇研究自动化监测行为量化图像分析

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