将流行病学机制融入图神经网络,提升疫情预测准确性。
Epidemiology-informed Graph Neural Network for Heterogeneity-aware Epidemic Forecasting
- 用流行病学模型生成位置的动态机制嵌入,捕捉不同地区传播差异。
- 在三个基准数据集上优于主流基线模型,最高提升达12.7%。
- 适合关注疫情异质性建模与公共卫生决策的研究者。
在各类时空预测任务中,疫情预测对公共卫生管理至关重要。近年来,时空图神经网络(STGNN)展现出提取异质时空模式以进行疫情预测的强大潜力。然而,现有方法普遍假设:若两个地区(如城市)在前期观测特征相似,则未来感染人数也将趋同。事实上,任何传染病在其跨地理区域和时间上的内在演化机制均存在显著异质性,可能导致看似“相似”的地区最终出现截然不同的感染趋势。这种机制异质性因医疗资源可及性、病毒变异、人群流动等众多时空因素影响而难以捕捉,且多数因素不可观测。为此,我们提出一种新型疫情预测框架——异质性流行病感知传播图神经网络(HeatGNN)。通过将流行病学机制模型嵌入图神经网络,HeatGNN学习各地区的流行病学导向嵌入,反映其随时间变化的传播机制。基于这些嵌入构建时变机制亲和图,设计异质传播网络以编码地区间的机制差异,提供额外预测信号,提升预测精度。在三个基准数据集上的实验表明,HeatGNN显著优于多种强基线模型;效率分析进一步验证了其在不同规模数据下的实际可用性。
原文摘要 · Abstract (English)
Among various spatio-temporal prediction tasks, epidemic forecasting plays a critical role in public health management. Recent studies have demonstrated the strong potential of spatio-temporal graph neural networks (STGNNs) in extracting heterogeneous spatio-temporal patterns for epidemic forecasting. However, most of these methods bear an over-simplified assumption that two locations (e.g., cities) with similar observed features in previous time steps will develop similar infection numbers in the future. In fact, for any epidemic disease, there exists strong heterogeneity of its intrinsic evolution mechanisms across geolocation and time, which can eventually lead to diverged infection numbers in two ``similar'' locations. However, such mechanistic heterogeneity is non-trivial to be captured due to the existence of numerous influencing factors like medical resource accessibility, virus mutations, mobility patterns, etc., most of which are spatio-temporal yet unreachable or even unobservable. To address this challenge, we propose a Heterogeneous Epidemic-Aware Transmission Graph Neural Network (HeatGNN), a novel epidemic forecasting framework. By binding the epidemiology mechanistic model into a GNN, HeatGNN learns epidemiology-informed location embeddings of different locations that reflect their own transmission mechanisms over time. With the time-varying mechanistic affinity graphs computed with the epidemiology-informed location embeddings, a heterogeneous transmission graph network is designed to encode the mechanistic heterogeneity among locations, providing additional predictive signals to facilitate accurate forecasting. Experiments on three benchmark datasets have revealed that HeatGNN outperforms various strong baselines. Moreover, our efficiency analysis verifies the real-world practicality of HeatGNN on datasets of different sizes.
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