用视觉Transformer实现弱监督微生物计数,提升自动化水平。
Vision Transformers for Weakly-Supervised Microorganism Enumeration
- 采用视觉Transformer作为主干网络,实现弱监督下的微生物计数
- 在四个微生物数据集上表现稳健,虽略逊于ResNet但具备潜力
- 适合关注微生物图像分析与回归计数的科研人员
微生物计数在评估表面清洁度、污染水平和健康标准等应用中至关重要。传统方法依赖人工逐个计数,耗时费力。已有研究尝试通过计算机视觉与机器学习实现自动化,主要基于实例分割或密度估计。本文对比了视觉变压器(ViTs)在弱监督微生命数量统计中的表现,与ResNet等传统架构进行比较,并测试了TransCrowd等ViT模型。在四个微生物数据集上训练不同版本的ViT作为特征提取主干,以探索图像中微生物总数估算的新方法。结果表明,尽管ResNet整体表现更优,但ViT在所有数据集上均展现出良好性能,为微生物图像分析中的计数任务提供了有前景的新方向。本研究推动了弱监督下微生物计数的自动化进展,凸显了视觉变压器在回归计数任务中的潜力。
原文摘要 · Abstract (English)
Microorganism enumeration is an essential task in many applications, such as assessing contamination levels or ensuring health standards when evaluating surface cleanliness. However, it's traditionally performed by human-supervised methods that often require manual counting, making it tedious and time-consuming. Previous research suggests automating this task using computer vision and machine learning methods, primarily through instance segmentation or density estimation techniques. This study conducts a comparative analysis of vision transformers (ViTs) for weakly-supervised counting in microorganism enumeration, contrasting them with traditional architectures such as ResNet and investigating ViT-based models such as TransCrowd. We trained different versions of ViTs as the architectural backbone for feature extraction using four microbiology datasets to determine potential new approaches for total microorganism enumeration in images. Results indicate that while ResNets perform better overall, ViTs performance demonstrates competent results across all datasets, opening up promising lines of research in microorganism enumeration. This comparative study contributes to the field of microbial image analysis by presenting innovative approaches to the recurring challenge of microorganism enumeration and by highlighting the capabilities of ViTs in the task of regression counting.
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