用主动学习优化光遗传刺激,让神经动力学建模更高效
Active learning of neural population dynamics using two-photon holographic optogenetics
- 基于低秩动态系统模型,智能选择刺激哪些神经元
- 真实数据中减少一半实验数据量即可达到相同预测效果
- 适合脑机接口和神经环路研究者,尤其关注高效实验设计
近年来,双光子全息光遗传技术可精准刺激特定神经元群,同时结合双光子钙成像可测量整个神经群体的活动。尽管刺激模式空间巨大且实验耗时,但针对最优刺激模式的算法研究仍很少。本文提出一种主动学习方法,通过利用低秩结构,高效选择能最大化提供神经群体动力学信息的刺激模式。在小鼠运动皮层的真实与合成数据上验证,该方法可实现高达两倍的数据量节省,显著提升建模效率。所提方法基于一种新型低秩回归主动学习框架,具有独立应用价值。
原文摘要 · Abstract (English)
Recent advances in techniques for monitoring and perturbing neural populations have greatly enhanced our ability to study circuits in the brain. In particular, two-photon holographic optogenetics now enables precise photostimulation of experimenter-specified groups of individual neurons, while simultaneous two-photon calcium imaging enables the measurement of ongoing and induced activity across the neural population. Despite the enormous space of potential photostimulation patterns and the time-consuming nature of photostimulation experiments, very little algorithmic work has been done to determine the most effective photostimulation patterns for identifying the neural population dynamics. Here, we develop methods to efficiently select which neurons to stimulate such that the resulting neural responses will best inform a dynamical model of the neural population activity. Using neural population responses to photostimulation in mouse motor cortex, we demonstrate the efficacy of a low-rank linear dynamical systems model, and develop an active learning procedure which takes advantage of low-rank structure to determine informative photostimulation patterns. We demonstrate our approach on both real and synthetic data, obtaining in some cases as much as a two-fold reduction in the amount of data required to reach a given predictive power. Our active stimulation design method is based on a novel active learning procedure for low-rank regression, which may be of independent interest.
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