arXiv:2412.04094eess.IVcs.CV2024-12中稿 · MICCAI-BraTS 2024被引 8

基于影像特征分型与模型集成,提升脑肿瘤分割精度。

Magnetic Resonance Imaging Feature-Based Subtyping and Model Ensemble for Enhanced Brain Tumor Segmentation

  • 融合多模型与自适应预/后处理,利用影像组学区分肿瘤亚型。
  • 在儿科、脑膜瘤和转移瘤上分别达到0.926、0.801、0.688的分割准确率。
  • 适用于临床需求强、肿瘤异质性高的脑肿瘤自动分割场景。

多参数磁共振成像(mpMRI)中脑肿瘤的精确自动分割对量化分析至关重要,日益影响临床诊断与预后判断。2024年国际脑肿瘤分割挑战赛(BraTS 2024)提供了独特基准,涵盖成人及儿童脑肿瘤,包括儿科脑肿瘤(PED)、脑膜瘤(MEN-RT)和脑转移瘤(MET)等。相比以往版本,该挑战赛通过细化评估区域显著提升临床相关性。本文提出一种基于深度学习的模型集成方法,结合前沿分割模型,并引入创新的自适应预/后处理技术,利用基于MRI的影像组学分析实现肿瘤亚型区分。针对BraTS数据集中的高度异质性肿瘤,该方法提升了分割模型的精度与泛化能力。在最终测试集上,对PED、MEN-RT和MET的全肿瘤分割平均病灶级Dice系数分别为0.926、0.801和0.688。结果表明该方法在多种脑肿瘤类型中均有效提升了分割性能与泛化能力。源代码公开于https://github.com/Precision-Medical-Imaging-Group/HOPE-Segmenter-Kids,同时提供开源网页应用 https://segmenter.hope4kids.io/,使用容器 aparida12/brats-peds-2024:v20240913。

原文摘要 · Abstract (English)

Accurate and automatic segmentation of brain tumors in multi-parametric magnetic resonance imaging (mpMRI) is essential for quantitative measurements, which play an increasingly important role in clinical diagnosis and prognosis. The International Brain Tumor Segmentation (BraTS) Challenge 2024 offers a unique benchmarking opportunity, including various types of brain tumors in both adult and pediatric populations, such as pediatric brain tumors (PED), meningiomas (MEN-RT) and brain metastases (MET), among others. Compared to previous editions, BraTS 2024 has implemented changes to substantially increase clinical relevance, such as refined tumor regions for evaluation. We propose a deep learning-based ensemble approach that integrates state-of-the-art segmentation models. Additionally, we introduce innovative, adaptive pre- and post-processing techniques that employ MRI-based radiomic analyses to differentiate tumor subtypes. Given the heterogeneous nature of the tumors present in the BraTS datasets, this approach enhances the precision and generalizability of segmentation models. On the final testing sets, our method achieved mean lesion-wise Dice similarity coefficients of 0.926, 0.801, and 0.688 for the whole tumor in PED, MEN-RT, and MET, respectively. These results demonstrate the effectiveness of our approach in improving segmentation performance and generalizability for various brain tumor types. The source code of our implementation is available at https://github.com/Precision-Medical-Imaging-Group/HOPE-Segmenter-Kids. Additionally, an open-source web-application is accessible at https://segmenter.hope4kids.io/ which uses the docker container aparida12/brats-peds-2024:v20240913 .

脑肿瘤分割影像组学模型集成多模态

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