提出dsLassoCov,实现联邦学习中高效协变量控制
dsLassoCov: a federated machine learning approach incorporating covariate control
- 基于lasso思想设计分布式协变量控制方法
- 在真实六数据库研究中复现了大型暴露组分析结果
- 适合需要隐私保护的多中心生物医学研究
机器学习在生物医学研究中广泛应用,得益于数据可得性的提升。然而,由于法律限制和数据治理复杂性,跨机构数据整合面临挑战。联邦学习可在保护隐私的前提下直接使用地理分布的数据训练模型,但如何有效控制协变量影响仍是个难题。传统协变量控制方法在联邦场景下因通信开销大而难以应用,尤其在高维数据中。为此,我们提出dsLassoCov,一种专为联邦学习设计的协变量控制方法,可高效实现模型训练中的协变量调整。在生物医学分析中,该方法能识别受混杂因素影响的生物标志物。通过模拟数据验证,dsLassoCov能有效管理混杂效应。在真实世界数据中,我们利用六个地理分布数据库复现了一项大规模暴露组研究,结果与先前研究一致。本方法解决了协变量控制难题,有望加速联邦学习在大规模生物医学研究中的应用。
原文摘要 · Abstract (English)
Machine learning has been widely adopted in biomedical research, fueled by the increasing availability of data. However, integrating datasets across institutions is challenging due to legal restrictions and data governance complexities. Federated learning allows the direct, privacy preserving training of machine learning models using geographically distributed datasets, but faces the challenge of how to appropriately control for covariate effects. The naive implementation of conventional covariate control methods in federated learning scenarios is often impractical due to the substantial communication costs, particularly with high-dimensional data. To address this issue, we introduce dsLassoCov, a machine learning approach designed to control for covariate effects and allow an efficient training in federated learning. In biomedical analysis, this allow the biomarker selection against the confounding effects. Using simulated data, we demonstrate that dsLassoCov can efficiently and effectively manage confounding effects during model training. In our real-world data analysis, we replicated a large-scale Exposome analysis using data from six geographically distinct databases, achieving results consistent with previous studies. By resolving the challenge of covariate control, our proposed approach can accelerate the application of federated learning in large-scale biomedical studies.
Thank you to arXiv for use of its open access interoperability. PaperDance 不是 arXiv 官方产品;中文卡片由大模型生成,请以原文为准。