用生成模型扩充细菌拉曼光谱数据,提升小样本下的识别准确率。
DiffRaman: A Conditional Latent Denoising Diffusion Probabilistic Model for Bacterial Raman Spectroscopy Identification Under Limited Data Conditions
- 基于条件潜空间去噪扩散模型生成合成拉曼光谱。
- 在数据稀缺时显著提升诊断模型性能,生成谱图接近真实实验数据。
- 相比现有方法,生成质量更高且计算更高效,适合罕见细菌识别。
拉曼光谱在生化检测领域备受关注,尤其在病原菌快速识别中应用广泛。将该技术与深度学习结合以实现自动化细菌拉曼光谱诊断,已成为近年研究重点。然而,现有深度学习方法的诊断性能高度依赖充足数据集,在拉曼光谱数据有限的情况下,难以充分优化神经网络参数。为此,本文提出一种利用深度生成模型扩充数据量的方法,以提升细菌拉曼光谱识别精度。具体地,我们引入DiffRaman——一种针对拉曼光谱生成的条件潜空间去噪扩散概率模型。实验表明,DiffRaman生成的合成细菌拉曼光谱能有效模拟真实实验数据,从而显著提升诊断模型性能,尤其在数据稀缺条件下。此外,相较于现有生成模型,DiffRaman在生成质量和计算效率方面均有提升。该方法为数据匮乏场景下的自动化细菌拉曼光谱诊断提供了有效解决方案,为减少光谱测量劳动和增强稀有菌种识别提供了新思路。
原文摘要 · Abstract (English)
Raman spectroscopy has attracted significant attention in various biochemical detection fields, especially in the rapid identification of pathogenic bacteria. The integration of this technology with deep learning to facilitate automated bacterial Raman spectroscopy diagnosis has emerged as a key focus in recent research. However, the diagnostic performance of existing deep learning methods largely depends on a sufficient dataset, and in scenarios where there is a limited availability of Raman spectroscopy data, it is inadequate to fully optimize the numerous parameters of deep neural networks. To address these challenges, this paper proposes a data generation method utilizing deep generative models to expand the data volume and enhance the recognition accuracy of bacterial Raman spectra. Specifically, we introduce DiffRaman, a conditional latent denoising diffusion probability model for Raman spectra generation. Experimental results demonstrate that synthetic bacterial Raman spectra generated by DiffRaman can effectively emulate real experimental spectra, thereby enhancing the performance of diagnostic models, especially under conditions of limited data. Furthermore, compared to existing generative models, the proposed DiffRaman offers improvements in both generation quality and computational efficiency. Our DiffRaman approach offers a well-suited solution for automated bacteria Raman spectroscopy diagnosis in data-scarce scenarios, offering new insights into alleviating the labor of spectroscopic measurements and enhancing rare bacteria identification.
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