arXiv:2412.12965q-bio.TOeess.IV2024-12被引 2

打造开放共享的免疫荧光成像资源库,助力科研高效推进

The IBEX Imaging Knowledge-Base: A Community Resource Enabling Adoption and Development of Immunofluoresence Imaging Methods

  • 构建基于GitHub的开放平台,整合协议、数据、软件等资源
  • 提供抗体验证数据,包含推荐与不推荐结果,减少实验失败
  • 支持全球研究者协作交流,加速方法迭代与科学发现

迭代式漂白扩展多重检测能力(IBEX)知识库是一个面向研究人员的中央门户,用于采用和开发相关的二维与三维免疫荧光成像技术。该知识库设计借鉴开源软件社区经验,包含三个部分:开发平台(GitHub)、静态网站及数据存档服务。通过提供推荐与非推荐试剂(如一抗、二抗)的验证数据,知识库在研究全周期中推动开放科学实践。除报告负面结果外,还提供协议、视频、数据集、软件和论文等共享渠道,促进方法应用与演进。专用讨论论坛增强研究者间的社区感,解决文献未涵盖的问题。全球科学家正因此加快科学发现速度,减少重复投入,提升数据可信度。

原文摘要 · Abstract (English)

The iterative bleaching extends multiplexity (IBEX) Knowledge-Base is a central portal for researchers adopting IBEX and related 2D and 3D immunofluorescence imaging methods. The design of the Knowledge-Base is modeled after efforts in the open-source software community and includes three facets: a development platform (GitHub), static website, and service for data archiving. The Knowledge-Base facilitates the practice of open science throughout the research life cycle by providing validation data for recommended and non-recommended reagents, such as primary and secondary antibodies. In addition to reporting negative data, the Knowledge-Base empowers method adoption and evolution by providing a venue for sharing protocols, videos, datasets, software, and publications. A dedicated discussion forum fosters a sense of community among researchers while addressing questions not covered in published manuscripts. Together, scientists from around the world are advancing scientific discovery at a faster pace, reducing wasted time and effort, and instilling greater confidence in the resulting data.

免疫荧光开放科学资源共享方法学

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