针对癌症亚型少样本分类难题,提出基于任务特异性嵌入的元学习方法。
TSEML: A task-specific embedding-based method for few-shot classification of cancer molecular subtypes
- 设计TSEML框架,融合MAML与ProtoNet优势捕捉细粒度特征。
- 在TCGA Few-Shot数据集上实现优于现有方法的少样本分类性能。
- 适用于小样本、异构癌症数据,助力精准诊断与个性化治疗。
癌症分子亚型分型是个性化治疗的关键上游任务,但高质量标注样本稀缺,制约深度学习应用。本文构建了首个癌症分子亚型少样本分类数据集TCGA Few-Shot,提出任务特异性嵌入的元学习框架TSEML,结合模型无关元学习(MAML)与原型网络(ProtoNet)优势,有效挖掘多任务相关知识。在TCGA Few-Shot数据集上的对比实验表明,TSEML在少样本条件下显著提升分类性能,为小样本癌症亚型识别提供高效解决方案。
原文摘要 · Abstract (English)
Molecular subtyping of cancer is recognized as a critical and challenging upstream task for personalized therapy. Existing deep learning methods have achieved significant performance in this domain when abundant data samples are available. However, the acquisition of densely labeled samples for cancer molecular subtypes remains a significant challenge for conventional data-intensive deep learning approaches. In this work, we focus on the few-shot molecular subtype prediction problem in heterogeneous and small cancer datasets, aiming to enhance precise diagnosis and personalized treatment. We first construct a new few-shot dataset for cancer molecular subtype classification and auxiliary cancer classification, named TCGA Few-Shot, from existing publicly available datasets. To effectively leverage the relevant knowledge from both tasks, we introduce a task-specific embedding-based meta-learning framework (TSEML). TSEML leverages the synergistic strengths of a model-agnostic meta-learning (MAML) approach and a prototypical network (ProtoNet) to capture diverse and fine-grained features. Comparative experiments conducted on the TCGA Few-Shot dataset demonstrate that our TSEML framework achieves superior performance in addressing the problem of few-shot molecular subtype classification.
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