用晚期结节数据+生物感知归一化,提升早期肺结节恶性预测准确率。
Training Set Augmentation and Biology-Aware Harmonization Improve Radiomic Models for Lung Cancer Prediction in Indeterminate Nodules
- 用晚期良恶性结节扩充训练集,解决早期数据少问题。
- 引入生物学特征协同校正扫描差异,使模型性能显著提升(AUC达0.74)。
- 适合做肺结节影像组学建模的研究者参考方法设计。
基于CT影像组学的机器学习有望在标准诊疗手段无法检出前,更早预测肺结节的恶性程度。但早期发展阶段结节恶性率低、图像采集方式不一致,制约了影像组学模型的构建。为此,研究者通过引入后期发展阶段的良恶性结节(共225例)扩充训练集,并对采集差异进行归一化处理。分析了106个早期结节(低于标准诊断敏感度)。仅使用早期结节数据训练的分类器表现接近随机水平。当加入后期数据后,若采用未考虑生物学差异的归一化方法,模型性能未能持续提升;而采用包含发展阶段与病理类型协变量的归一化(ROC-AUC 0.74 [0.69–0.79]),或分数据集单独归一化(ROC-AUC 0.71 [0.66–0.77]),均显著优于基准(Delong检验,p≤0.05;PR-AUC Wilcoxon检验,p≤0.05)。本研究在小规模单中心数据上验证:结合不同发展阶段的结节影像特征,必须采用生物感知的归一化策略才能有效建模。
原文摘要 · Abstract (English)
CT radiomics-based machine learning has potential to predict lung cancer in pulmonary nodules (PNs) earlier than standard-of-care methods. Low malignancy rates in early-development PNs and variable image acquisition hinder development of radiomic models for diagnosing these PNs. To address these challenges, we augmented training using later-development PNs and harmonized for acquisition effects. We examine early-development benign and malignant PNs (n=106) below the sensitivity of standard-of-care diagnosis. Classifiers predicting malignancy performed near chance when trained on ComBat-harmonized radiomic features from only early-development PNs. We then augmented training with later-development benign and malignant PNs (n=225). We evaluated whether harmonization must incorporate biology that impacts acquisition effects in added training data. To correct variability from four acquisition protocols, we compared: 1) biology-unaware harmonization, 2) harmonizing with a covariate distinguishing early-development, later-development benign, later-development malignant datasets, 3) harmonizing each dataset separately. Models trained using augmentation, but biology-unaware harmonization, failed to improve consistently. Augmented training data harmonized with a covariate (ROC-AUC 0.74 [0.69-0.79]) or separately (ROC-AUC 0.71 [0.66-0.77]) yielded higher test ROC-AUC (Delong, p<=0.05) and PR-AUC (Wilcoxon, p<=0.05). In a proof-of-principle methodological study, we demonstrate with a small single-center dataset that combining radiomic features from later-development benign and malignant PNs requires biology-aware harmonization.
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