arXiv:2501.07166cs.AI2025-01被引 16

融合文本描述与化学结构,提升复杂用药推荐准确率

Natural Language-Assisted Multi-modal Medication Recommendation

  • 构建患者与药物双模态对齐框架,利用预训练语言模型提取文本特征
  • 在三个公开数据集上平均提升4.72%的杰卡德分数,达到新基准
  • 适合医疗智能决策、临床辅助系统研发人员参考

组合用药推荐(CMR)是医疗健康领域的重要任务,尤其在长期治疗中可帮助医生为复杂病情患者制定更精准的处方。现有方法多从电子健康记录(EHR)中提取信息,部分研究考虑药物化学结构,但忽略了文本描述中蕴含的功能性信息,且未充分利用患者病历中的文本知识。为此,我们提出自然语言辅助的多模态用药推荐模型(NLA-MMR),将CMR建模为患者与药物模态间的对齐问题。该模型采用预训练语言模型(PLMs)提取患者与药物的领域知识作为基础表示:药物侧结合化学结构与文本描述,患者侧基于诊断、手术和症状的文本生成表示。在三个公开数据集上的实验表明,NLA-MMR取得新的最佳性能,平均杰卡德分数提升4.72%。代码已开源。

原文摘要 · Abstract (English)

Combinatorial medication recommendation(CMR) is a fundamental task of healthcare, which offers opportunities for clinical physicians to provide more precise prescriptions for patients with intricate health conditions, particularly in the scenarios of long-term medical care. Previous research efforts have sought to extract meaningful information from electronic health records (EHRs) to facilitate combinatorial medication recommendations. Existing learning-based approaches further consider the chemical structures of medications, but ignore the textual medication descriptions in which the functionalities are clearly described. Furthermore, the textual knowledge derived from the EHRs of patients remains largely underutilized. To address these issues, we introduce the Natural Language-Assisted Multi-modal Medication Recommendation(NLA-MMR), a multi-modal alignment framework designed to learn knowledge from the patient view and medication view jointly. Specifically, NLA-MMR formulates CMR as an alignment problem from patient and medication modalities. In this vein, we employ pretrained language models(PLMs) to extract in-domain knowledge regarding patients and medications, serving as the foundational representation for both modalities. In the medication modality, we exploit both chemical structures and textual descriptions to create medication representations. In the patient modality, we generate the patient representations based on textual descriptions of diagnosis, procedure, and symptom. Extensive experiments conducted on three publicly accessible datasets demonstrate that NLA-MMR achieves new state-of-the-art performance, with a notable average improvement of 4.72% in Jaccard score. Our source code is publicly available on https://github.com/jtan1102/NLA-MMR_CIKM_2024.

用药推荐多模态自然语言

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