arXiv:2501.08897cs.AI2025-01被引 15

用大模型和知识图谱自动规划高分子逆合成路径

Automated Retrosynthesis Planning of Macromolecules Using Large Language Models and Knowledge Graphs

  • 结合大模型与知识图谱,自动提取文献中的反应数据
  • 构建含数百条路径的逆合成树,发现已知与新路线
  • 首次实现高分子全自动化逆合成规划,适合材料研发者

在材料化学中,尤其是高分子科学领域,识别可靠的合成路径十分复杂,主要源于高分子命名体系复杂且常不唯一。为此,我们提出一种集成大语言模型(LLMs)与知识图谱的智能体系统,利用LLM强大的物质名称识别能力,将文献中的化学实体与反应数据结构化存储。该系统可全自动完成文献检索、反应数据提取、数据库查询、逆合成路径树构建,并通过进一步文献检索与路径推荐扩展结果。针对单个产物可分解为多个中间体的多分支情况,提出全新的多分支反应路径搜索算法(MBRPS),突破以往仅支持单一中间体分解的限制。该工作首次实现基于大模型的高分子全自动化逆合成规划。应用于聚酰亚胺合成时,生成包含数百条路径的逆合成树,并推荐优化路径,涵盖已知与新型合成路线。这表明利用大模型进行文献咨询以完成特定任务,在海量材料文献背景下具有可行性与必要性。

原文摘要 · Abstract (English)

Identifying reliable synthesis pathways in materials chemistry is a complex task, particularly in polymer science, due to the intricate and often non-unique nomenclature of macromolecules. To address this challenge, we propose an agent system that integrates large language models (LLMs) and knowledge graphs. By leveraging LLMs' powerful capabilities for extracting and recognizing chemical substance names, and storing the extracted data in a structured knowledge graph, our system fully automates the retrieval of relevant literatures, extraction of reaction data, database querying, construction of retrosynthetic pathway trees, further expansion through the retrieval of additional literature and recommendation of optimal reaction pathways. By considering the complex interdependencies among chemical reactants, a novel Multi-branched Reaction Pathway Search Algorithm (MBRPS) is proposed to help identify all valid multi-branched reaction pathways, which arise when a single product decomposes into multiple reaction intermediates. In contrast, previous studies were limited to cases where a product decomposes into at most one reaction intermediate. This work represents the first attempt to develop a fully automated retrosynthesis planning agent tailored specially for macromolecules powered by LLMs. Applied to polyimide synthesis, our new approach constructs a retrosynthetic pathway tree with hundreds of pathways and recommends optimized routes, including both known and novel pathways. This demonstrates utilizing LLMs for literature consultation to accomplish specific tasks is possible and crucial for future materials research, given the vast amount of materials-related literature.

逆合成高分子大模型知识图谱

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