用激光扫描数据生成玉米三维模型,提升表型分析精度。
Procedural Generation of 3D Maize Plant Architecture from LIDAR Data
- 先用粒子群算法粗拟合叶片表面,再用可微分编程精修细节。
- 相比初始拟合,可微分NURBS使重建表面精度显著提升。
- 适合植物表型研究者使用,代码开源便于推广。
本研究提出一种从激光雷达点云数据中生成玉米(Zea mays)三维程序化模型的鲁棒框架,为传统田间表型分析提供可扩展替代方案。该框架利用非均匀有理B样条(NURBS)表面建模玉米叶片,结合粒子群优化(PSO)进行初始表面近似,并采用可微分编程框架NURBS-Diff对表面进行精确优化以拟合点云数据。第一阶段通过优化控制点生成初步匹配点云的NURBS表面,提供可靠起始点;第二阶段利用NURBS-Diff细化几何结构,捕捉复杂叶形细节。结果表明,虽然PSO能建立稳健的初始拟合,但引入可微分NURBS显著提升了重建表面的整体质量与保真度。该分层优化策略实现了多种基因型玉米叶片的高精度三维重建,支持后续复杂性状如叶序特征的提取。方法在田间生长的多种玉米基因型上验证有效,所有代码开源,推动表型分析技术普及。
原文摘要 · Abstract (English)
This study introduces a robust framework for generating procedural 3D models of maize (Zea mays) plants from LiDAR point cloud data, offering a scalable alternative to traditional field-based phenotyping. Our framework leverages Non-Uniform Rational B-Spline (NURBS) surfaces to model the leaves of maize plants, combining Particle Swarm Optimization (PSO) for an initial approximation of the surface and a differentiable programming framework for precise refinement of the surface to fit the point cloud data. In the first optimization phase, PSO generates an approximate NURBS surface by optimizing its control points, aligning the surface with the LiDAR data, and providing a reliable starting point for refinement. The second phase uses NURBS-Diff, a differentiable programming framework, to enhance the accuracy of the initial fit by refining the surface geometry and capturing intricate leaf details. Our results demonstrate that, while PSO establishes a robust initial fit, the integration of differentiable NURBS significantly improves the overall quality and fidelity of the reconstructed surface. This hierarchical optimization strategy enables accurate 3D reconstruction of maize leaves across diverse genotypes, facilitating the subsequent extraction of complex traits like phyllotaxy. We demonstrate our approach on diverse genotypes of field-grown maize plants. All our codes are open-source to democratize these phenotyping approaches.
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