arXiv:2501.15246eess.IV2025-01被引 2

用局部化深度学习加速冷冻电镜断层成像重建,速度提升100倍且效果更优。

CryoLithe: Rapid Cryo-ET Reconstruction via Transform-Localized Deep Learning

  • 直接从倾斜序列端到端重建,采用局部化低内存网络设计。
  • 去噪与缺失楔形校正效果优于Icecream等先进方法,速度提升100倍。
  • 对数据分布变化鲁棒,无需微调即可在真实数据上取得佳效。

冷冻电子断层成像(cryo-ET)可实现细胞结构的三维可视化。由于信噪比极低及样品倾角范围受限,高分辨率体积重建极具挑战。近年来,基于自监督深度学习的方法通过后处理滤波反投影(FBP)初始重建,在信号处理迭代算法基础上显著提升了重建质量,但其耗时长达数十小时,且需大量内存。本文提出CryoLithe,一种直接从对齐倾斜序列端到端估计体数据的网络。CryoLithe在去噪与缺失楔形校正方面达到或超越Icecream、Cryo-CARE、IsoNet或DeepDeWedge等先进自监督方法的效果,同时速度提升两个数量级。为实现此目标,我们设计了局部化、内存高效的重建网络。实验表明,利用变换域局部性使网络对分布偏移具有鲁棒性,支持有效监督训练,并在真实数据上无需重训练即获得优异结果。CryoLithe重建成果可直接用于下游分析,如分割和亚断层平均,代码已开源:https://github.com/swing-research/CryoLithe。

原文摘要 · Abstract (English)

Cryo-electron tomography (cryo-ET) enables 3D visualization of cellular structures. Accurate reconstruction of high-resolution volumes is complicated by the very low signal-to-noise ratio and a restricted range of sample tilts. Recent self-supervised deep learning approaches, which post-process initial reconstructions by filtered backprojection (FBP), have significantly improved reconstruction quality with respect to signal processing iterative algorithms, but they are slow, taking dozens of hours for an expert to reconstruct a tomogram and demand large memory. We present CryoLithe, an end-to-end network that directly estimates the volume from an aligned tilt series. CryoLithe achieves denoising and missing wedge correction comparable or better than state-of-the-art self-supervised deep learning approaches such as Icecream, Cryo-CARE, IsoNet or DeepDeWedge, while being two orders of magnitude faster. To achieve this, we implement a local, memory-efficient reconstruction network. We demonstrate that leveraging transform-domain locality makes our network robust to distribution shifts, enabling effective supervised training and giving excellent results on real data$\unicode{x2013}$without retraining or fine-tuning. CryoLithe reconstructions facilitate downstream cryo-ET analysis, including segmentation and subtomogram averaging and is openly available: https://github.com/swing-research/CryoLithe.

冷冻电镜图像重建深度学习生物成像

Thank you to arXiv for use of its open access interoperability. PaperDance 不是 arXiv 官方产品;中文卡片由大模型生成,请以原文为准。