用双流自监督预训练提升眼底OCT图像诊断准确率
ViT-2SPN: Vision Transformer-based Dual-Stream Self-Supervised Pretraining Networks for Retinal OCT Classification
- 构建双流自监督框架,利用数据增强生成两视图对比学习
- 在OCTMNIST上实现0.93平均AUC,优于现有自监督方法
- 适合缺乏标注数据的眼病影像分析研究者参考
光学相干断层扫描(OCT)是诊断多种眼病的重要无创成像技术。尽管临床价值高,但基于OCT的诊断工具开发面临公开数据集有限、标注稀疏及隐私问题。尽管深度学习已有进展,上述挑战仍未解决。为此,本文提出基于视觉变换器的双流自监督预训练网络(ViT-2SPN),旨在提升特征提取能力并改善诊断准确率。该框架采用三阶段流程:监督预训练、自监督预训练(SSP)和监督微调。预训练阶段使用OCTMNIST数据集(含4类疾病共97,477张未标注图像)并结合数据增强生成双视图;采用ViT-Base作为主干网络,通过负余弦相似度损失对齐特征表示;预训练持续50轮,学习率0.0001,动量0.999。微调阶段在OCTMNIST的5.129%分层子集上,采用10折交叉验证。实验结果显示,ViT-2SPN获得平均AUC 0.93,准确率0.77,精确率0.81,召回率0.75,F1得分0.76,优于现有自监督方法。
原文摘要 · Abstract (English)
Optical Coherence Tomography (OCT) is a non-invasive imaging modality essential for diagnosing various eye diseases. Despite its clinical significance, developing OCT-based diagnostic tools faces challenges, such as limited public datasets, sparse annotations, and privacy concerns. Although deep learning has made progress in automating OCT analysis, these challenges remain unresolved. To address these limitations, we introduce the Vision Transformer-based Dual-Stream Self-Supervised Pretraining Network (ViT-2SPN), a novel framework designed to enhance feature extraction and improve diagnostic accuracy. ViT-2SPN employs a three-stage workflow: Supervised Pretraining, Self-Supervised Pretraining (SSP), and Supervised Fine-Tuning. The pretraining phase leverages the OCTMNIST dataset (97,477 unlabeled images across four disease classes) with data augmentation to create dual-augmented views. A Vision Transformer (ViT-Base) backbone extracts features, while a negative cosine similarity loss aligns feature representations. Pretraining is conducted over 50 epochs with a learning rate of 0.0001 and momentum of 0.999. Fine-tuning is performed on a stratified 5.129% subset of OCTMNIST using 10-fold cross-validation. ViT-2SPN achieves a mean AUC of 0.93, accuracy of 0.77, precision of 0.81, recall of 0.75, and an F1 score of 0.76, outperforming existing SSP-based methods.
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