arXiv:2502.00943cs.CL2025-02被引 9

用大模型统一处理临床文本,零样本提取癌症患者关键信息

Universal Abstraction: Harnessing Frontier Models to Structure Real-World Data at Scale

  • 用可定制提示模板+前沿大模型实现零样本医疗抽象
  • 在多种癌症属性上表现媲美甚至超越专用模型
  • 适合需快速部署医疗数据结构化的研究与医疗机构

真实世界患者信息多为非结构化临床文本。医学抽象从自由文本中提取并标准化关键结构化属性,是注册库维护、临床试验运营和真实世界证据生成的前置条件。以往方法需为每个属性构建专用模型,依赖大量人工规则或标注,难以扩展。本文表明,现有前沿大模型已具备通用抽象能力。我们提出UniMedAbstractor(UMA),一种基于任意前沿大模型的零样本统一框架,仅需轻量级自然语言提示调整即可适配新属性。相比传统方法,无需特定属性训练标签或手工规则,显著降低开发成本。我们在肿瘤学领域评估了UMA,涵盖从单份病历中提取的简单属性(如体能状态)到跨时间点多份病历推理的复杂属性(如肿瘤分期)。仅使用GPT-4o,UMA在多数属性上达到或超过针对该属性专门优化的先进方法性能。

原文摘要 · Abstract (English)

A significant fraction of real-world patient information resides in unstructured clinical text. Medical abstraction extracts and normalizes key structured attributes from free-text clinical notes, which is the prerequisite for a variety of important downstream applications, including registry curation, clinical trial operations, and real-world evidence generation. Prior medical abstraction methods typically resort to building attribute-specific models, each of which requires extensive manual effort such as rule creation or supervised label annotation for the individual attribute, thus limiting scalability. In this paper, we show that existing frontier models already possess the universal abstraction capability for scaling medical abstraction to a wide range of clinical attributes. We present UniMedAbstractor (UMA), a unifying framework for zero-shot medical abstraction with a modular, customizable prompt template and the selection of any frontier large language models. Given a new attribute for abstraction, users only need to conduct lightweight prompt adaptation in UMA to adjust the specification in natural languages. Compared to traditional methods, UMA eliminates the need for attribute-specific training labels or handcrafted rules, thus substantially reducing the development time and cost. We conducted a comprehensive evaluation of UMA in oncology using a wide range of marquee attributes representing the cancer patient journey. These include relatively simple attributes typically specified within a single clinical note (e.g. performance status), as well as complex attributes requiring sophisticated reasoning across multiple notes at various time points (e.g. tumor staging). Based on a single frontier model such as GPT-4o, UMA matched or even exceeded the performance of state-of-the-art attribute-specific methods, each of which was tailored to the individual attribute.

医疗文本大模型零样本数据结构化

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