用图计算优化注意力机制，让Transformer处理超长序列

Transformers have demonstrated great success in numerous domains including natural language processing and bioinformatics. This success stems from the use of the attention mechanism by these models in order to represent and propagate pairwise interactions between individual tokens of sequential data. However, the primary limitation of this operation is its quadratic memory and time complexity in relation to the input's context length - the length of a sequence over which the interactions need to be captured. This significantly limits the length of sequences that can be inferred upon by these models. Extensive research has been conducted to reduce the number of pairwise interactions to sub-quadratic in relation to the context length by introducing sparsity into the attention mechanism through the development of sparse attention masks. However, efficient implementations that achieve "true sparsity" are lacking. In this work, we address this issue by proposing a graph computing view of attention where tokens are perceived as nodes of the graph and the attention mask determines the edges of the graph. Using this view, we develop graph processing algorithms to implement the attention mechanism. Both theoretically and empirically, we demonstrate that our algorithms only perform the needed computations, i.e., they are work optimal. We also perform extensive experimentation using popular attention masks to explore the impact of sparsity on execution time and achievable context length. Our experiments demonstrate significant speedups in execution times compared to state-of-the-art attention implementations such as FlashAttention for large sequence lengths. We also demonstrate that our algorithms are able to achieve extremely long sequence lengths of as high as 160 million on a single NVIDIA A100 GPU (SXM4 80GB).