MedGNN通过多尺度图学习提升医疗时间序列分类精度
MedGNN: Towards Multi-resolution Spatiotemporal Graph Learning for Medical Time Series Classification
- 构建动态多分辨率图结构捕捉时空依赖
- 在多个真实数据集上准确率超越现有方法
- 适合处理带基线漂移的多视角医疗信号
医疗时间序列在现实医疗系统中至关重要,可用于患者健康状态监测。准确分类医疗时间序列(如心电图信号)有助于早期发现与诊断。传统方法依赖手工特征提取和统计分析;近年来,机器学习与深度学习方法逐渐流行。然而,现有方法常无法充分建模不同尺度下的复杂空间动态,忽略动态多分辨率时空联合依赖关系。此外,它们较少考虑医疗时间序列特有的基线漂移问题及多视角特性,严重影响预测性能。为此,我们提出多分辨率时空图学习框架MedGNN。首先,设计自适应多分辨率图结构以学习动态多尺度嵌入;其次,为解决基线漂移问题,引入差分注意力网络,在有限差分上执行自注意力机制进行时序建模;再者,利用频域卷积网络捕捉频率域中的互补信息,以学习多视角特征;最后,提出多分辨率图变压器架构,建模动态依赖并融合多分辨率信息。我们在多个真实世界医疗数据集上进行了广泛实验,验证了方法的优越性。代码已公开。
原文摘要 · Abstract (English)
Medical time series has been playing a vital role in real-world healthcare systems as valuable information in monitoring health conditions of patients. Accurate classification for medical time series, e.g., Electrocardiography (ECG) signals, can help for early detection and diagnosis. Traditional methods towards medical time series classification rely on handcrafted feature extraction and statistical methods; with the recent advancement of artificial intelligence, the machine learning and deep learning methods have become more popular. However, existing methods often fail to fully model the complex spatial dynamics under different scales, which ignore the dynamic multi-resolution spatial and temporal joint inter-dependencies. Moreover, they are less likely to consider the special baseline wander problem as well as the multi-view characteristics of medical time series, which largely hinders their prediction performance. To address these limitations, we propose a Multi-resolution Spatiotemporal Graph Learning framework, MedGNN, for medical time series classification. Specifically, we first propose to construct multi-resolution adaptive graph structures to learn dynamic multi-scale embeddings. Then, to address the baseline wander problem, we propose Difference Attention Networks to operate self-attention mechanisms on the finite difference for temporal modeling. Moreover, to learn the multi-view characteristics, we utilize the Frequency Convolution Networks to capture complementary information of medical time series from the frequency domain. In addition, we introduce the Multi-resolution Graph Transformer architecture to model the dynamic dependencies and fuse the information from different resolutions. Finally, we have conducted extensive experiments on multiple medical real-world datasets that demonstrate the superior performance of our method. Our Code is available.
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