用检测代替分割,提升病理图像细胞分析的精度与速度
Cell Nuclei Detection and Classification in Whole Slide Images with Transformers
- 提出基于Transformer的检测模型CellNuc-DETR,跳过繁琐分割步骤
- 在PanNuke等数据集上达顶尖性能,比最快分割方法快2倍
- 适合临床高通量病理分析,兼顾准确率与推理效率
组织病理学全切片图像(WSIs)中细胞核的精确高效检测与分类对数字病理应用至关重要。传统分割方法计算成本高且需大量后处理,难以满足高通量临床需求。本文提出从分割转向检测的新范式,引入CellNuc-DETR模型。在PanNuke数据集上评估其检测与分类性能,并在CoNSeP和MoNuSeg上进行跨数据集验证以评估鲁棒性与泛化能力。结果表明,该模型在两项任务上均达到当前最优水平。此外,在大尺寸WSI上的效率测试显示,它不仅精度超越现有方法,推理速度也显著提升:相比最快分割方法HoVer-NeXt快2倍,且在精度上优于CellViT,推理速度约快10倍。这些结果确立了CellNuc-DETR在数字病理细胞分析中的优越地位,兼具高精度与高效率。
原文摘要 · Abstract (English)
Accurate and efficient cell nuclei detection and classification in histopathological Whole Slide Images (WSIs) are pivotal for digital pathology applications. Traditional cell segmentation approaches, while commonly used, are computationally expensive and require extensive post-processing, limiting their practicality for high-throughput clinical settings. In this paper, we propose a paradigm shift from segmentation to detection for extracting cell information from WSIs, introducing CellNuc-DETR as a more effective solution. We evaluate the accuracy performance of CellNuc-DETR on the PanNuke dataset and conduct cross-dataset evaluations on CoNSeP and MoNuSeg to assess robustness and generalization capabilities. Our results demonstrate state-of-the-art performance in both cell nuclei detection and classification tasks. Additionally, we assess the efficiency of CellNuc-DETR on large WSIs, showing that it not only outperforms current methods in accuracy but also significantly reduces inference times. Specifically, CellNuc-DETR is twice as fast as the fastest segmentation-based method, HoVer-NeXt, while achieving substantially higher accuracy. Moreover, it surpasses CellViT in accuracy and is approximately ten times more efficient in inference speed on WSIs. These results establish CellNuc-DETR as a superior approach for cell analysis in digital pathology, combining high accuracy with computational efficiency.
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