针对显微镜图像稀疏内容导致对焦失败的问题,提出高效一拍对焦新方法
SparseFocus: Learning-based One-shot Autofocus for Microscopy with Sparse Content
- 分两阶段:先评估图像区域重要性,再基于重要区域计算失焦距离
- 在密集、稀疏、极稀疏场景下均超越现有方法,准确率显著提升
- 适用于真实病理切片扫描系统,适合医学影像与自动化显微成像研究者
显微成像中的自动对焦对于高通量实时扫描至关重要。传统方法依赖复杂硬件或迭代爬山算法,近年学习型方法虽在一次性对焦中表现优异,但当图像内容稀疏时,性能大幅下降。本文指出图像内容丰富度严重影响对焦效果,并提出名为SparseFocus的内容重要性驱动方案,采用新型两阶段流程:第一阶段评估图像区域重要性,第二阶段基于选定重要区域计算失焦距离。为验证方法并推动研究,我们构建了一个包含百万级标注模糊图像的大规模数据集,覆盖密集、稀疏和极稀疏场景。实验表明,SparseFocus在所有内容稀疏程度下均优于现有方法。此外,该方法已集成至我们的全切片成像(WSI)系统,在实际应用中表现良好。代码与数据集将在论文发表后公开。
原文摘要 · Abstract (English)
Autofocus is necessary for high-throughput and real-time scanning in microscopic imaging. Traditional methods rely on complex hardware or iterative hill-climbing algorithms. Recent learning-based approaches have demonstrated remarkable efficacy in a one-shot setting, avoiding hardware modifications or iterative mechanical lens adjustments. However, in this paper, we highlight a significant challenge that the richness of image content can significantly affect autofocus performance. When the image content is sparse, previous autofocus methods, whether traditional climbing-hill or learning-based, tend to fail. To tackle this, we propose a content-importance-based solution, named SparseFocus, featuring a novel two-stage pipeline. The first stage measures the importance of regions within the image, while the second stage calculates the defocus distance from selected important regions. To validate our approach and benefit the research community, we collect a large-scale dataset comprising millions of labelled defocused images, encompassing both dense, sparse and extremely sparse scenarios. Experimental results show that SparseFocus surpasses existing methods, effectively handling all levels of content sparsity. Moreover, we integrate SparseFocus into our Whole Slide Imaging (WSI) system that performs well in real-world applications. The code and dataset will be made available upon the publication of this paper.
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