arXiv:2502.09665cs.CV2025-02

用预训练扩散模型从少量细胞图像中发现细微表型差异

Revealing Subtle Phenotypes in Small Microscopy Datasets Using Latent Diffusion Models

  • 基于预训练潜在扩散模型,无需大量数据即可建模
  • 在小规模显微图像数据上成功识别出可见与不可见的表型变化
  • 适合数据稀缺或算力有限的生物研究场景

在细胞图像中识别细微表型变异对推动生物学研究和加速药物发现至关重要。这些差异常被细胞异质性掩盖,难以区分不同实验条件下的差异。近年来,深度生成模型在图像翻译中展现出揭示此类细微表型的潜力,为细胞与分子生物学及新型生物标志物发现开辟新路径。其中,扩散模型因其生成高质量、逼真图像的能力脱颖而出。然而,训练扩散模型通常需要大规模数据集和大量计算资源,在生物研究中往往受限。本文提出一种新方法,利用预训练的潜在扩散模型揭示细微表型变化。我们在多个小规模显微图像数据集上进行了定性和定量验证。结果表明,该方法能有效检测表型差异,捕捉到视觉上明显及难以察觉的变化。最终结果凸显了该方法在数据和算力受限情境下进行表型检测的巨大潜力。

原文摘要 · Abstract (English)

Identifying subtle phenotypic variations in cellular images is critical for advancing biological research and accelerating drug discovery. These variations are often masked by the inherent cellular heterogeneity, making it challenging to distinguish differences between experimental conditions. Recent advancements in deep generative models have demonstrated significant potential for revealing these nuanced phenotypes through image translation, opening new frontiers in cellular and molecular biology as well as the identification of novel biomarkers. Among these generative models, diffusion models stand out for their ability to produce high-quality, realistic images. However, training diffusion models typically requires large datasets and substantial computational resources, both of which can be limited in biological research. In this work, we propose a novel approach that leverages pre-trained latent diffusion models to uncover subtle phenotypic changes. We validate our approach qualitatively and quantitatively on several small datasets of microscopy images. Our findings reveal that our approach enables effective detection of phenotypic variations, capturing both visually apparent and imperceptible differences. Ultimately, our results highlight the promising potential of this approach for phenotype detection, especially in contexts constrained by limited data and computational capacity.

显微图像扩散模型表型分析小样本

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