用频域正交Procrustes分析对多维分离数据进行精准对齐。
Frequency-domain alignment of heterogeneous, multidimensional separations data through complex orthogonal Procrustes analysis
- 将数据转至频域后,通过正交Procrustes实现跨样本对齐。
- 在最差对齐条件下仍能准确匹配合成色谱图的峰结构。
- 适用于异构多维数据自动分析,适合生物组学研究者。
多维分离数据能揭示复杂生物样品的详细信息,但因化学成分峰在不同分析批次中沿一、二维保留时间发生漂移,数据比对困难,高级分析难以开展。现有方法如平行因子分析(PARAFAC)、多变量曲线分辨(MCR)或时移不变多线性模型需用户指定组分数与兴趣区域,但对真正异构数据的自动化应用仍具挑战。本文提出一种简单方法:对经对数变换模拟漂移但仍保持数据拓扑结构的合成多维分离数据,采用频域正交Procrustes分析实现对齐。该方法在接近最恶劣对齐场景下仍可有效比较两个合成色谱图,显著提升跨样本一致性。
原文摘要 · Abstract (English)
Multidimensional separations data have the capacity to reveal detailed information about complex biological samples. However, data analysis has been an ongoing challenge in the area since the peaks that represent chemical factors may drift over the course of several analytical runs along the first and second dimension retention times. This makes higher-level analyses of the data difficult, since a 1-1 comparison of samples is seldom possible without sophisticated pre-processing routines. Further complicating the issue is the fact that closely co-eluting components will need to be resolved, typically using some variants of Parallel Factor Analysis (PARAFAC), Multivariate Curve Resolution (MCR), or the recently explored Shift-Invariant Multi-linearity. These algorithms work with a user-specified number of components, and regions of interest that are then summarized as a peak table that is invariant to shift. However, identifying regions of interest across truly heterogeneous data remains an ongoing issue, for automated deployment of these algorithms. This work offers a very simple solution to the alignment problem through a orthogonal Procrustes analysis of the frequency-domain representation of synthetic multidimensional separations data, for peaks that are logarithmically transformed to simulate shift while preserving the underlying topology of the data. Using this very simple method for analysis, two synthetic chromatograms can be compared under close to the worst possible scenarios for alignment.
Thank you to arXiv for use of its open access interoperability. PaperDance 不是 arXiv 官方产品;中文卡片由大模型生成,请以原文为准。