统一病理图像分析框架,提升模型可比性与研究效率
UnPuzzle: A Unified Framework for Pathology Image Analysis
- 模块化流程覆盖预处理到实验全链路
- 支持WSI与ROI任务的高效基准测试
- 适配自监督等多学习范式,助力科研复现
病理图像分析在医学诊断中至关重要,深度学习显著提升了诊断准确率与研究能力。然而,现有研究在预处理方法和模型/数据库架构上缺乏标准化,导致不同方法难以公平比较,亟需统一的流水线与全面基准。本文提出UnPuzzle,一个涵盖多种病理任务的统一框架,从高层到低层、上游到下游任务,提供数据预处理、模型组合、任务配置与实验执行的模块化流程。该框架支持全切片图像(WSI)与感兴趣区域(ROI)任务的高效基准测试,并兼容自监督学习、多任务学习与多模态学习等多种学习范式,促进病理AI模型的综合开发。通过在多个数据集上的广泛基准测试,验证了UnPuzzle在简化病理AI研究、提升可复现性方面的有效性。我们期望UnPuzzle成为未来病理AI发展的基石,推动更开放、透明与标准化的模型评估。代码已公开于 https://github.com/Puzzle-AI/UnPuzzle。
原文摘要 · Abstract (English)
Pathology image analysis plays a pivotal role in medical diagnosis, with deep learning techniques significantly advancing diagnostic accuracy and research. While numerous studies have been conducted to address specific pathological tasks, the lack of standardization in pre-processing methods and model/database architectures complicates fair comparisons across different approaches. This highlights the need for a unified pipeline and comprehensive benchmarks to enable consistent evaluation and accelerate research progress. In this paper, we present UnPuzzle, a novel and unified framework for pathological AI research that covers a broad range of pathology tasks with benchmark results. From high-level to low-level, upstream to downstream tasks, UnPuzzle offers a modular pipeline that encompasses data pre-processing, model composition,taskconfiguration,andexperimentconduction.Specifically, it facilitates efficient benchmarking for both Whole Slide Images (WSIs) and Region of Interest (ROI) tasks. Moreover, the framework supports variouslearningparadigms,includingself-supervisedlearning,multi-task learning,andmulti-modallearning,enablingcomprehensivedevelopment of pathology AI models. Through extensive benchmarking across multiple datasets, we demonstrate the effectiveness of UnPuzzle in streamlining pathology AI research and promoting reproducibility. We envision UnPuzzle as a cornerstone for future advancements in pathology AI, providing a more accessible, transparent, and standardized approach to model evaluation. The UnPuzzle repository is publicly available at https://github.com/Puzzle-AI/UnPuzzle.
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